Gene : Brara.B00277 B. rapa FPsc v1.3
Defline:  (1 of 6) 6.2.1.5 - Succinate--CoA ligase (ADP-forming) / Succinyl-CoA synthetase (ADP-forming) Genomic Order:  277
Name:  ? Brara.B00277 Secondary Identifier:  ? PAC:30609446
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00277 0.5kb upstream 0.5kb upstream 2673 true A02: 1332661-1335333 Brassica rapa FPsc
Brara.B00277 0.5kb upstream 0.5kb upstream 500 false A02: 1332661-1333160 Brassica rapa FPsc
Brara.B00277 0.5kb downstream 0.5kb downstream 2673 true A02: 1333161-1335833 Brassica rapa FPsc
Brara.B00277 0.5kb downstream 0.5kb downstream 500 false A02: 1335334-1335833 Brassica rapa FPsc
Brara.B00277 1.0kb upstream 1.0kb upstream 3173 true A02: 1332161-1335333 Brassica rapa FPsc
Brara.B00277 1.0kb upstream 1.0kb upstream 1000 false A02: 1332161-1333160 Brassica rapa FPsc
Brara.B00277 1.0kb downstream 1.0kb downstream 3173 true A02: 1333161-1336333 Brassica rapa FPsc
Brara.B00277 1.0kb downstream 1.0kb downstream 1000 false A02: 1335334-1336333 Brassica rapa FPsc
Brara.B00277 2.0kb upstream 2.0kb upstream 4173 true A02: 1331161-1335333 Brassica rapa FPsc
Brara.B00277 2.0kb upstream 2.0kb upstream 2000 false A02: 1331161-1333160 Brassica rapa FPsc
Brara.B00277 2.0kb downstream 2.0kb downstream 4173 true A02: 1333161-1337333 Brassica rapa FPsc
Brara.B00277 2.0kb downstream 2.0kb downstream 2000 false A02: 1335334-1337333 Brassica rapa FPsc
Brara.B00277 5.0kb upstream 5.0kb upstream 7173 true A02: 1328161-1335333 Brassica rapa FPsc
Brara.B00277 5.0kb upstream 5.0kb upstream 5000 false A02: 1328161-1333160 Brassica rapa FPsc
Brara.B00277 5.0kb downstream 5.0kb downstream 7173 true A02: 1333161-1340333 Brassica rapa FPsc
Brara.B00277 5.0kb downstream 5.0kb downstream 5000 false A02: 1335334-1340333 Brassica rapa FPsc
Brara.B00277 10.0kb upstream 10.0kb upstream 12173 true A02: 1323161-1335333 Brassica rapa FPsc
Brara.B00277 10.0kb upstream 10.0kb upstream 10000 false A02: 1323161-1333160 Brassica rapa FPsc
Brara.B00277 10.0kb downstream 10.0kb downstream 12173 true A02: 1333161-1345333 Brassica rapa FPsc
Brara.B00277 10.0kb downstream 10.0kb downstream 10000 false A02: 1335334-1345333 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345289 5261 Brassicaceae Singleton cluster - no MSA
123785162 5264 Brassicales-Malvales Singleton cluster - no MSA
124283315 5266 SBM Singleton cluster - no MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier