Gene : Brara.B00116 B. rapa FPsc v1.3
Defline:  (1 of 1) 2.3.3.9 - Malate synthase / Malic-condensing enzyme Genomic Order:  116
Name:  ? Brara.B00116 Secondary Identifier:  ? PAC:30609506
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00116 0.5kb upstream 0.5kb upstream 3056 true A02: 602893-605948 Brassica rapa FPsc
Brara.B00116 0.5kb upstream 0.5kb upstream 500 false A02: 605449-605948 Brassica rapa FPsc
Brara.B00116 0.5kb downstream 0.5kb downstream 3056 true A02: 602393-605448 Brassica rapa FPsc
Brara.B00116 0.5kb downstream 0.5kb downstream 500 false A02: 602393-602892 Brassica rapa FPsc
Brara.B00116 1.0kb upstream 1.0kb upstream 3556 true A02: 602893-606448 Brassica rapa FPsc
Brara.B00116 1.0kb upstream 1.0kb upstream 1000 false A02: 605449-606448 Brassica rapa FPsc
Brara.B00116 1.0kb downstream 1.0kb downstream 3556 true A02: 601893-605448 Brassica rapa FPsc
Brara.B00116 1.0kb downstream 1.0kb downstream 1000 false A02: 601893-602892 Brassica rapa FPsc
Brara.B00116 2.0kb upstream 2.0kb upstream 4556 true A02: 602893-607448 Brassica rapa FPsc
Brara.B00116 2.0kb upstream 2.0kb upstream 2000 false A02: 605449-607448 Brassica rapa FPsc
Brara.B00116 2.0kb downstream 2.0kb downstream 4556 true A02: 600893-605448 Brassica rapa FPsc
Brara.B00116 2.0kb downstream 2.0kb downstream 2000 false A02: 600893-602892 Brassica rapa FPsc
Brara.B00116 5.0kb upstream 5.0kb upstream 7556 true A02: 602893-610448 Brassica rapa FPsc
Brara.B00116 5.0kb upstream 5.0kb upstream 5000 false A02: 605449-610448 Brassica rapa FPsc
Brara.B00116 5.0kb downstream 5.0kb downstream 7556 true A02: 597893-605448 Brassica rapa FPsc
Brara.B00116 5.0kb downstream 5.0kb downstream 5000 false A02: 597893-602892 Brassica rapa FPsc
Brara.B00116 10.0kb upstream 10.0kb upstream 12556 true A02: 602893-615448 Brassica rapa FPsc
Brara.B00116 10.0kb upstream 10.0kb upstream 10000 false A02: 605449-615448 Brassica rapa FPsc
Brara.B00116 10.0kb downstream 10.0kb downstream 12556 true A02: 592893-605448 Brassica rapa FPsc
Brara.B00116 10.0kb downstream 10.0kb downstream 10000 false A02: 592893-602892 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375054 5261 Brassicaceae View MSA
123830660 5264 Brassicales-Malvales View MSA
124341065 5266 SBM View MSA
124239458 5268 Malvidae View MSA
124066130 5270 Rosid View MSA
123738008 5271 Pentapetalae View MSA
122788677 5272 Eudicot View MSA
122048246 5273 Angiosperm View MSA
121346455 5274 Embryophyte View MSA
123425007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier