Gene : Brara.G03666 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR11699:SF49 - SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL Genomic Order:  3666
Name:  ? Brara.G03666 Secondary Identifier:  ? PAC:30634139
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLUDEG-I-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-4321 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6473 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6535 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G03666 0.5kb upstream 0.5kb upstream 5337 true A07: 27085141-27090477 Brassica rapa FPsc
Brara.G03666 0.5kb upstream 0.5kb upstream 500 false A07: 27089978-27090477 Brassica rapa FPsc
Brara.G03666 0.5kb downstream 0.5kb downstream 5337 true A07: 27084641-27089977 Brassica rapa FPsc
Brara.G03666 0.5kb downstream 0.5kb downstream 500 false A07: 27084641-27085140 Brassica rapa FPsc
Brara.G03666 1.0kb upstream 1.0kb upstream 5837 true A07: 27085141-27090977 Brassica rapa FPsc
Brara.G03666 1.0kb upstream 1.0kb upstream 1000 false A07: 27089978-27090977 Brassica rapa FPsc
Brara.G03666 1.0kb downstream 1.0kb downstream 5837 true A07: 27084141-27089977 Brassica rapa FPsc
Brara.G03666 1.0kb downstream 1.0kb downstream 1000 false A07: 27084141-27085140 Brassica rapa FPsc
Brara.G03666 2.0kb upstream 2.0kb upstream 6837 true A07: 27085141-27091977 Brassica rapa FPsc
Brara.G03666 2.0kb upstream 2.0kb upstream 2000 false A07: 27089978-27091977 Brassica rapa FPsc
Brara.G03666 2.0kb downstream 2.0kb downstream 6837 true A07: 27083141-27089977 Brassica rapa FPsc
Brara.G03666 2.0kb downstream 2.0kb downstream 2000 false A07: 27083141-27085140 Brassica rapa FPsc
Brara.G03666 5.0kb upstream 5.0kb upstream 9837 true A07: 27085141-27094977 Brassica rapa FPsc
Brara.G03666 5.0kb upstream 5.0kb upstream 5000 false A07: 27089978-27094977 Brassica rapa FPsc
Brara.G03666 5.0kb downstream 5.0kb downstream 9837 true A07: 27080141-27089977 Brassica rapa FPsc
Brara.G03666 5.0kb downstream 5.0kb downstream 5000 false A07: 27080141-27085140 Brassica rapa FPsc
Brara.G03666 10.0kb upstream 10.0kb upstream 14837 true A07: 27085141-27099977 Brassica rapa FPsc
Brara.G03666 10.0kb upstream 10.0kb upstream 10000 false A07: 27089978-27099977 Brassica rapa FPsc
Brara.G03666 10.0kb downstream 10.0kb downstream 14837 true A07: 27075141-27089977 Brassica rapa FPsc
Brara.G03666 10.0kb downstream 10.0kb downstream 10000 false A07: 27075141-27085140 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373089 5261 Brassicaceae View MSA
123832522 5264 Brassicales-Malvales View MSA
124343757 5266 SBM View MSA
124242671 5268 Malvidae View MSA
124063190 5270 Rosid View MSA
123737868 5271 Pentapetalae View MSA
122769906 5272 Eudicot View MSA
122045886 5273 Angiosperm View MSA
121345720 5274 Embryophyte View MSA
123427690 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier