Gene : Brara.B00087 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11709:SF116 - LACCASE-11 Genomic Order:  87
Name:  ? Brara.B00087 Secondary Identifier:  ? PAC:30610504
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5466 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00087 0.5kb upstream 0.5kb upstream 3086 true A02: 429611-432696 Brassica rapa FPsc
Brara.B00087 0.5kb upstream 0.5kb upstream 500 false A02: 432197-432696 Brassica rapa FPsc
Brara.B00087 0.5kb downstream 0.5kb downstream 3086 true A02: 429111-432196 Brassica rapa FPsc
Brara.B00087 0.5kb downstream 0.5kb downstream 500 false A02: 429111-429610 Brassica rapa FPsc
Brara.B00087 1.0kb upstream 1.0kb upstream 3586 true A02: 429611-433196 Brassica rapa FPsc
Brara.B00087 1.0kb upstream 1.0kb upstream 1000 false A02: 432197-433196 Brassica rapa FPsc
Brara.B00087 1.0kb downstream 1.0kb downstream 3586 true A02: 428611-432196 Brassica rapa FPsc
Brara.B00087 1.0kb downstream 1.0kb downstream 1000 false A02: 428611-429610 Brassica rapa FPsc
Brara.B00087 2.0kb upstream 2.0kb upstream 4586 true A02: 429611-434196 Brassica rapa FPsc
Brara.B00087 2.0kb upstream 2.0kb upstream 2000 false A02: 432197-434196 Brassica rapa FPsc
Brara.B00087 2.0kb downstream 2.0kb downstream 4586 true A02: 427611-432196 Brassica rapa FPsc
Brara.B00087 2.0kb downstream 2.0kb downstream 2000 false A02: 427611-429610 Brassica rapa FPsc
Brara.B00087 5.0kb upstream 5.0kb upstream 7586 true A02: 429611-437196 Brassica rapa FPsc
Brara.B00087 5.0kb upstream 5.0kb upstream 5000 false A02: 432197-437196 Brassica rapa FPsc
Brara.B00087 5.0kb downstream 5.0kb downstream 7586 true A02: 424611-432196 Brassica rapa FPsc
Brara.B00087 5.0kb downstream 5.0kb downstream 5000 false A02: 424611-429610 Brassica rapa FPsc
Brara.B00087 10.0kb upstream 10.0kb upstream 12586 true A02: 429611-442196 Brassica rapa FPsc
Brara.B00087 10.0kb upstream 10.0kb upstream 10000 false A02: 432197-442196 Brassica rapa FPsc
Brara.B00087 10.0kb downstream 10.0kb downstream 12586 true A02: 419611-432196 Brassica rapa FPsc
Brara.B00087 10.0kb downstream 10.0kb downstream 10000 false A02: 419611-429610 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367508 5261 Brassicaceae View MSA
123835573 5264 Brassicales-Malvales View MSA
124350795 5266 SBM View MSA
124249575 5268 Malvidae View MSA
124072546 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier