Gene : Brara.D02300 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR23041:SF64 - E3 UBIQUITIN-PROTEIN LIGASE BAH1 Genomic Order:  2300
Name:  ? Brara.D02300 Secondary Identifier:  ? PAC:30622998
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D02300 0.5kb upstream 0.5kb upstream 2382 true A04: 18477110-18479491 Brassica rapa FPsc
Brara.D02300 0.5kb upstream 0.5kb upstream 500 false A04: 18478992-18479491 Brassica rapa FPsc
Brara.D02300 0.5kb downstream 0.5kb downstream 2382 true A04: 18476610-18478991 Brassica rapa FPsc
Brara.D02300 0.5kb downstream 0.5kb downstream 500 false A04: 18476610-18477109 Brassica rapa FPsc
Brara.D02300 1.0kb upstream 1.0kb upstream 2882 true A04: 18477110-18479991 Brassica rapa FPsc
Brara.D02300 1.0kb upstream 1.0kb upstream 1000 false A04: 18478992-18479991 Brassica rapa FPsc
Brara.D02300 1.0kb downstream 1.0kb downstream 2882 true A04: 18476110-18478991 Brassica rapa FPsc
Brara.D02300 1.0kb downstream 1.0kb downstream 1000 false A04: 18476110-18477109 Brassica rapa FPsc
Brara.D02300 2.0kb upstream 2.0kb upstream 3882 true A04: 18477110-18480991 Brassica rapa FPsc
Brara.D02300 2.0kb upstream 2.0kb upstream 2000 false A04: 18478992-18480991 Brassica rapa FPsc
Brara.D02300 2.0kb downstream 2.0kb downstream 3882 true A04: 18475110-18478991 Brassica rapa FPsc
Brara.D02300 2.0kb downstream 2.0kb downstream 2000 false A04: 18475110-18477109 Brassica rapa FPsc
Brara.D02300 5.0kb upstream 5.0kb upstream 6882 true A04: 18477110-18483991 Brassica rapa FPsc
Brara.D02300 5.0kb upstream 5.0kb upstream 5000 false A04: 18478992-18483991 Brassica rapa FPsc
Brara.D02300 5.0kb downstream 5.0kb downstream 6882 true A04: 18472110-18478991 Brassica rapa FPsc
Brara.D02300 5.0kb downstream 5.0kb downstream 5000 false A04: 18472110-18477109 Brassica rapa FPsc
Brara.D02300 10.0kb upstream 10.0kb upstream 11882 true A04: 18477110-18488991 Brassica rapa FPsc
Brara.D02300 10.0kb upstream 10.0kb upstream 10000 false A04: 18478992-18488991 Brassica rapa FPsc
Brara.D02300 10.0kb downstream 10.0kb downstream 11882 true A04: 18467110-18478991 Brassica rapa FPsc
Brara.D02300 10.0kb downstream 10.0kb downstream 10000 false A04: 18467110-18477109 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379567 5261 Brassicaceae View MSA
123831644 5264 Brassicales-Malvales View MSA
124345582 5266 SBM View MSA
124240285 5268 Malvidae View MSA
124061797 5270 Rosid View MSA
123736545 5271 Pentapetalae View MSA
122788039 5272 Eudicot View MSA
122046768 5273 Angiosperm View MSA
121350146 5274 Embryophyte View MSA
123425854 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier