Gene : Brara.H01162 B. rapa FPsc v1.3
Defline:  (1 of 8) PTHR11465 - CATALASE Genomic Order:  1162
Name:  ? Brara.H01162 Secondary Identifier:  ? PAC:30649005
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc DETOX1-PWY Brassica rapa FPsc pathologic  
BrapaFPsc DETOX1-PWY-1 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H01162 0.5kb upstream 0.5kb upstream 2918 true A08: 13251578-13254495 Brassica rapa FPsc
Brara.H01162 0.5kb upstream 0.5kb upstream 500 false A08: 13251578-13252077 Brassica rapa FPsc
Brara.H01162 0.5kb downstream 0.5kb downstream 2918 true A08: 13252078-13254995 Brassica rapa FPsc
Brara.H01162 0.5kb downstream 0.5kb downstream 500 false A08: 13254496-13254995 Brassica rapa FPsc
Brara.H01162 1.0kb upstream 1.0kb upstream 3418 true A08: 13251078-13254495 Brassica rapa FPsc
Brara.H01162 1.0kb upstream 1.0kb upstream 1000 false A08: 13251078-13252077 Brassica rapa FPsc
Brara.H01162 1.0kb downstream 1.0kb downstream 3418 true A08: 13252078-13255495 Brassica rapa FPsc
Brara.H01162 1.0kb downstream 1.0kb downstream 1000 false A08: 13254496-13255495 Brassica rapa FPsc
Brara.H01162 2.0kb upstream 2.0kb upstream 4418 true A08: 13250078-13254495 Brassica rapa FPsc
Brara.H01162 2.0kb upstream 2.0kb upstream 2000 false A08: 13250078-13252077 Brassica rapa FPsc
Brara.H01162 2.0kb downstream 2.0kb downstream 4418 true A08: 13252078-13256495 Brassica rapa FPsc
Brara.H01162 2.0kb downstream 2.0kb downstream 2000 false A08: 13254496-13256495 Brassica rapa FPsc
Brara.H01162 5.0kb upstream 5.0kb upstream 7418 true A08: 13247078-13254495 Brassica rapa FPsc
Brara.H01162 5.0kb upstream 5.0kb upstream 5000 false A08: 13247078-13252077 Brassica rapa FPsc
Brara.H01162 5.0kb downstream 5.0kb downstream 7418 true A08: 13252078-13259495 Brassica rapa FPsc
Brara.H01162 5.0kb downstream 5.0kb downstream 5000 false A08: 13254496-13259495 Brassica rapa FPsc
Brara.H01162 10.0kb upstream 10.0kb upstream 12418 true A08: 13242078-13254495 Brassica rapa FPsc
Brara.H01162 10.0kb upstream 10.0kb upstream 10000 false A08: 13242078-13252077 Brassica rapa FPsc
Brara.H01162 10.0kb downstream 10.0kb downstream 12418 true A08: 13252078-13264495 Brassica rapa FPsc
Brara.H01162 10.0kb downstream 10.0kb downstream 10000 false A08: 13254496-13264495 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040958 5273 Angiosperm View MSA
122355401 5261 Brassicaceae Singleton cluster - no MSA
123793650 5264 Brassicales-Malvales Singleton cluster - no MSA
124291485 5266 SBM Singleton cluster - no MSA
124254242 5268 Malvidae View MSA
124061092 5270 Rosid View MSA
123744547 5271 Pentapetalae View MSA
122789351 5272 Eudicot View MSA
121344781 5274 Embryophyte View MSA
123424047 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier