Gene : Brara.B00796 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11088:SF30 - ADENYLATE ISOPENTENYLTRANSFERASE 3, CHLOROPLASTIC Genomic Order:  796
Name:  ? Brara.B00796 Secondary Identifier:  ? PAC:30608032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2681 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00796 0.5kb upstream 0.5kb upstream 2449 true A02: 3719170-3721618 Brassica rapa FPsc
Brara.B00796 0.5kb upstream 0.5kb upstream 500 false A02: 3721119-3721618 Brassica rapa FPsc
Brara.B00796 0.5kb downstream 0.5kb downstream 2449 true A02: 3718670-3721118 Brassica rapa FPsc
Brara.B00796 0.5kb downstream 0.5kb downstream 500 false A02: 3718670-3719169 Brassica rapa FPsc
Brara.B00796 1.0kb upstream 1.0kb upstream 2949 true A02: 3719170-3722118 Brassica rapa FPsc
Brara.B00796 1.0kb upstream 1.0kb upstream 1000 false A02: 3721119-3722118 Brassica rapa FPsc
Brara.B00796 1.0kb downstream 1.0kb downstream 2949 true A02: 3718170-3721118 Brassica rapa FPsc
Brara.B00796 1.0kb downstream 1.0kb downstream 1000 false A02: 3718170-3719169 Brassica rapa FPsc
Brara.B00796 2.0kb upstream 2.0kb upstream 3949 true A02: 3719170-3723118 Brassica rapa FPsc
Brara.B00796 2.0kb upstream 2.0kb upstream 2000 false A02: 3721119-3723118 Brassica rapa FPsc
Brara.B00796 2.0kb downstream 2.0kb downstream 3949 true A02: 3717170-3721118 Brassica rapa FPsc
Brara.B00796 2.0kb downstream 2.0kb downstream 2000 false A02: 3717170-3719169 Brassica rapa FPsc
Brara.B00796 5.0kb upstream 5.0kb upstream 6949 true A02: 3719170-3726118 Brassica rapa FPsc
Brara.B00796 5.0kb upstream 5.0kb upstream 5000 false A02: 3721119-3726118 Brassica rapa FPsc
Brara.B00796 5.0kb downstream 5.0kb downstream 6949 true A02: 3714170-3721118 Brassica rapa FPsc
Brara.B00796 5.0kb downstream 5.0kb downstream 5000 false A02: 3714170-3719169 Brassica rapa FPsc
Brara.B00796 10.0kb upstream 10.0kb upstream 11949 true A02: 3719170-3731118 Brassica rapa FPsc
Brara.B00796 10.0kb upstream 10.0kb upstream 10000 false A02: 3721119-3731118 Brassica rapa FPsc
Brara.B00796 10.0kb downstream 10.0kb downstream 11949 true A02: 3709170-3721118 Brassica rapa FPsc
Brara.B00796 10.0kb downstream 10.0kb downstream 10000 false A02: 3709170-3719169 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371498 5261 Brassicaceae View MSA
123829892 5264 Brassicales-Malvales View MSA
124338029 5266 SBM View MSA
124243543 5268 Malvidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier