Gene : Brara.H00946 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  946
Name:  ? Brara.H00946 Secondary Identifier:  ? PAC:30648563
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYCOGENSYNTH-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-622 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00946 0.5kb upstream 0.5kb upstream 5502 true A08: 11501205-11506706 Brassica rapa FPsc
Brara.H00946 0.5kb upstream 0.5kb upstream 500 false A08: 11501205-11501704 Brassica rapa FPsc
Brara.H00946 0.5kb downstream 0.5kb downstream 5502 true A08: 11501705-11507206 Brassica rapa FPsc
Brara.H00946 0.5kb downstream 0.5kb downstream 500 false A08: 11506707-11507206 Brassica rapa FPsc
Brara.H00946 1.0kb upstream 1.0kb upstream 6002 true A08: 11500705-11506706 Brassica rapa FPsc
Brara.H00946 1.0kb upstream 1.0kb upstream 1000 false A08: 11500705-11501704 Brassica rapa FPsc
Brara.H00946 1.0kb downstream 1.0kb downstream 6002 true A08: 11501705-11507706 Brassica rapa FPsc
Brara.H00946 1.0kb downstream 1.0kb downstream 1000 false A08: 11506707-11507706 Brassica rapa FPsc
Brara.H00946 2.0kb upstream 2.0kb upstream 7002 true A08: 11499705-11506706 Brassica rapa FPsc
Brara.H00946 2.0kb upstream 2.0kb upstream 2000 false A08: 11499705-11501704 Brassica rapa FPsc
Brara.H00946 2.0kb downstream 2.0kb downstream 7002 true A08: 11501705-11508706 Brassica rapa FPsc
Brara.H00946 2.0kb downstream 2.0kb downstream 2000 false A08: 11506707-11508706 Brassica rapa FPsc
Brara.H00946 5.0kb upstream 5.0kb upstream 10002 true A08: 11496705-11506706 Brassica rapa FPsc
Brara.H00946 5.0kb upstream 5.0kb upstream 5000 false A08: 11496705-11501704 Brassica rapa FPsc
Brara.H00946 5.0kb downstream 5.0kb downstream 10002 true A08: 11501705-11511706 Brassica rapa FPsc
Brara.H00946 5.0kb downstream 5.0kb downstream 5000 false A08: 11506707-11511706 Brassica rapa FPsc
Brara.H00946 10.0kb upstream 10.0kb upstream 15002 true A08: 11491705-11506706 Brassica rapa FPsc
Brara.H00946 10.0kb upstream 10.0kb upstream 10000 false A08: 11491705-11501704 Brassica rapa FPsc
Brara.H00946 10.0kb downstream 10.0kb downstream 15002 true A08: 11501705-11516706 Brassica rapa FPsc
Brara.H00946 10.0kb downstream 10.0kb downstream 10000 false A08: 11506707-11516706 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360271 5261 Brassicaceae View MSA
123829886 5264 Brassicales-Malvales View MSA
124343403 5266 SBM View MSA
124243663 5268 Malvidae View MSA
124062542 5270 Rosid View MSA
123737586 5271 Pentapetalae View MSA
122786746 5272 Eudicot View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier