Gene : Brara.H00794 B. rapa FPsc v1.3
Defline:  (1 of 3) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  794
Name:  ? Brara.H00794 Secondary Identifier:  ? PAC:30648296
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00794 0.5kb upstream 0.5kb upstream 1846 true A08: 10147761-10149606 Brassica rapa FPsc
Brara.H00794 0.5kb upstream 0.5kb upstream 500 false A08: 10147761-10148260 Brassica rapa FPsc
Brara.H00794 0.5kb downstream 0.5kb downstream 1846 true A08: 10148261-10150106 Brassica rapa FPsc
Brara.H00794 0.5kb downstream 0.5kb downstream 500 false A08: 10149607-10150106 Brassica rapa FPsc
Brara.H00794 1.0kb upstream 1.0kb upstream 2346 true A08: 10147261-10149606 Brassica rapa FPsc
Brara.H00794 1.0kb upstream 1.0kb upstream 1000 false A08: 10147261-10148260 Brassica rapa FPsc
Brara.H00794 1.0kb downstream 1.0kb downstream 2346 true A08: 10148261-10150606 Brassica rapa FPsc
Brara.H00794 1.0kb downstream 1.0kb downstream 1000 false A08: 10149607-10150606 Brassica rapa FPsc
Brara.H00794 2.0kb upstream 2.0kb upstream 3346 true A08: 10146261-10149606 Brassica rapa FPsc
Brara.H00794 2.0kb upstream 2.0kb upstream 2000 false A08: 10146261-10148260 Brassica rapa FPsc
Brara.H00794 2.0kb downstream 2.0kb downstream 3346 true A08: 10148261-10151606 Brassica rapa FPsc
Brara.H00794 2.0kb downstream 2.0kb downstream 2000 false A08: 10149607-10151606 Brassica rapa FPsc
Brara.H00794 5.0kb upstream 5.0kb upstream 6346 true A08: 10143261-10149606 Brassica rapa FPsc
Brara.H00794 5.0kb upstream 5.0kb upstream 5000 false A08: 10143261-10148260 Brassica rapa FPsc
Brara.H00794 5.0kb downstream 5.0kb downstream 6346 true A08: 10148261-10154606 Brassica rapa FPsc
Brara.H00794 5.0kb downstream 5.0kb downstream 5000 false A08: 10149607-10154606 Brassica rapa FPsc
Brara.H00794 10.0kb upstream 10.0kb upstream 11346 true A08: 10138261-10149606 Brassica rapa FPsc
Brara.H00794 10.0kb upstream 10.0kb upstream 10000 false A08: 10138261-10148260 Brassica rapa FPsc
Brara.H00794 10.0kb downstream 10.0kb downstream 11346 true A08: 10148261-10159606 Brassica rapa FPsc
Brara.H00794 10.0kb downstream 10.0kb downstream 10000 false A08: 10149607-10159606 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122355182 5261 Brassicaceae Singleton cluster - no MSA
123793464 5264 Brassicales-Malvales Singleton cluster - no MSA
124291303 5266 SBM Singleton cluster - no MSA
124250769 5268 Malvidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier