Gene : Brara.D02720 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  2720
Name:  ? Brara.D02720 Secondary Identifier:  ? PAC:30620459
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D02720 0.5kb upstream 0.5kb upstream 5719 true A04: 20785199-20790917 Brassica rapa FPsc
Brara.D02720 0.5kb upstream 0.5kb upstream 500 false A04: 20790418-20790917 Brassica rapa FPsc
Brara.D02720 0.5kb downstream 0.5kb downstream 5719 true A04: 20784699-20790417 Brassica rapa FPsc
Brara.D02720 0.5kb downstream 0.5kb downstream 500 false A04: 20784699-20785198 Brassica rapa FPsc
Brara.D02720 1.0kb upstream 1.0kb upstream 6219 true A04: 20785199-20791417 Brassica rapa FPsc
Brara.D02720 1.0kb upstream 1.0kb upstream 1000 false A04: 20790418-20791417 Brassica rapa FPsc
Brara.D02720 1.0kb downstream 1.0kb downstream 6219 true A04: 20784199-20790417 Brassica rapa FPsc
Brara.D02720 1.0kb downstream 1.0kb downstream 1000 false A04: 20784199-20785198 Brassica rapa FPsc
Brara.D02720 2.0kb upstream 2.0kb upstream 7219 true A04: 20785199-20792417 Brassica rapa FPsc
Brara.D02720 2.0kb upstream 2.0kb upstream 2000 false A04: 20790418-20792417 Brassica rapa FPsc
Brara.D02720 2.0kb downstream 2.0kb downstream 7219 true A04: 20783199-20790417 Brassica rapa FPsc
Brara.D02720 2.0kb downstream 2.0kb downstream 2000 false A04: 20783199-20785198 Brassica rapa FPsc
Brara.D02720 5.0kb upstream 5.0kb upstream 10219 true A04: 20785199-20795417 Brassica rapa FPsc
Brara.D02720 5.0kb upstream 5.0kb upstream 5000 false A04: 20790418-20795417 Brassica rapa FPsc
Brara.D02720 5.0kb downstream 5.0kb downstream 10219 true A04: 20780199-20790417 Brassica rapa FPsc
Brara.D02720 5.0kb downstream 5.0kb downstream 5000 false A04: 20780199-20785198 Brassica rapa FPsc
Brara.D02720 10.0kb upstream 10.0kb upstream 15219 true A04: 20785199-20800417 Brassica rapa FPsc
Brara.D02720 10.0kb upstream 10.0kb upstream 10000 false A04: 20790418-20800417 Brassica rapa FPsc
Brara.D02720 10.0kb downstream 10.0kb downstream 15219 true A04: 20775199-20790417 Brassica rapa FPsc
Brara.D02720 10.0kb downstream 10.0kb downstream 10000 false A04: 20775199-20785198 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122348359 5261 Brassicaceae Singleton cluster - no MSA
123842721 5264 Brassicales-Malvales View MSA
124323724 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier