Gene : Brara.B00699 B. rapa FPsc v1.3
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  699
Name:  ? Brara.B00699 Secondary Identifier:  ? PAC:30610203
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CAROTENOID-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6475 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00699 0.5kb upstream 0.5kb upstream 3616 true A02: 3229295-3232910 Brassica rapa FPsc
Brara.B00699 0.5kb upstream 0.5kb upstream 500 false A02: 3232411-3232910 Brassica rapa FPsc
Brara.B00699 0.5kb downstream 0.5kb downstream 3616 true A02: 3228795-3232410 Brassica rapa FPsc
Brara.B00699 0.5kb downstream 0.5kb downstream 500 false A02: 3228795-3229294 Brassica rapa FPsc
Brara.B00699 1.0kb upstream 1.0kb upstream 4116 true A02: 3229295-3233410 Brassica rapa FPsc
Brara.B00699 1.0kb upstream 1.0kb upstream 1000 false A02: 3232411-3233410 Brassica rapa FPsc
Brara.B00699 1.0kb downstream 1.0kb downstream 4116 true A02: 3228295-3232410 Brassica rapa FPsc
Brara.B00699 1.0kb downstream 1.0kb downstream 1000 false A02: 3228295-3229294 Brassica rapa FPsc
Brara.B00699 2.0kb upstream 2.0kb upstream 5116 true A02: 3229295-3234410 Brassica rapa FPsc
Brara.B00699 2.0kb upstream 2.0kb upstream 2000 false A02: 3232411-3234410 Brassica rapa FPsc
Brara.B00699 2.0kb downstream 2.0kb downstream 5116 true A02: 3227295-3232410 Brassica rapa FPsc
Brara.B00699 2.0kb downstream 2.0kb downstream 2000 false A02: 3227295-3229294 Brassica rapa FPsc
Brara.B00699 5.0kb upstream 5.0kb upstream 8116 true A02: 3229295-3237410 Brassica rapa FPsc
Brara.B00699 5.0kb upstream 5.0kb upstream 5000 false A02: 3232411-3237410 Brassica rapa FPsc
Brara.B00699 5.0kb downstream 5.0kb downstream 8116 true A02: 3224295-3232410 Brassica rapa FPsc
Brara.B00699 5.0kb downstream 5.0kb downstream 5000 false A02: 3224295-3229294 Brassica rapa FPsc
Brara.B00699 10.0kb upstream 10.0kb upstream 13116 true A02: 3229295-3242410 Brassica rapa FPsc
Brara.B00699 10.0kb upstream 10.0kb upstream 10000 false A02: 3232411-3242410 Brassica rapa FPsc
Brara.B00699 10.0kb downstream 10.0kb downstream 13116 true A02: 3219295-3232410 Brassica rapa FPsc
Brara.B00699 10.0kb downstream 10.0kb downstream 10000 false A02: 3219295-3229294 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122345557 5261 Brassicaceae Singleton cluster - no MSA
123842626 5264 Brassicales-Malvales View MSA
124323649 5266 SBM View MSA
124251202 5268 Malvidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier