Gene : Brara.B00467 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR12741:SF21 - CALLOSE SYNTHASE 3 Genomic Order:  467
Name:  ? Brara.B00467 Secondary Identifier:  ? PAC:30609981
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6773 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00467 0.5kb upstream 0.5kb upstream 8435 true A02: 2164594-2173028 Brassica rapa FPsc
Brara.B00467 0.5kb upstream 0.5kb upstream 500 false A02: 2172529-2173028 Brassica rapa FPsc
Brara.B00467 0.5kb downstream 0.5kb downstream 8435 true A02: 2164094-2172528 Brassica rapa FPsc
Brara.B00467 0.5kb downstream 0.5kb downstream 500 false A02: 2164094-2164593 Brassica rapa FPsc
Brara.B00467 1.0kb upstream 1.0kb upstream 8935 true A02: 2164594-2173528 Brassica rapa FPsc
Brara.B00467 1.0kb upstream 1.0kb upstream 1000 false A02: 2172529-2173528 Brassica rapa FPsc
Brara.B00467 1.0kb downstream 1.0kb downstream 8935 true A02: 2163594-2172528 Brassica rapa FPsc
Brara.B00467 1.0kb downstream 1.0kb downstream 1000 false A02: 2163594-2164593 Brassica rapa FPsc
Brara.B00467 2.0kb upstream 2.0kb upstream 9935 true A02: 2164594-2174528 Brassica rapa FPsc
Brara.B00467 2.0kb upstream 2.0kb upstream 2000 false A02: 2172529-2174528 Brassica rapa FPsc
Brara.B00467 2.0kb downstream 2.0kb downstream 9935 true A02: 2162594-2172528 Brassica rapa FPsc
Brara.B00467 2.0kb downstream 2.0kb downstream 2000 false A02: 2162594-2164593 Brassica rapa FPsc
Brara.B00467 5.0kb upstream 5.0kb upstream 12935 true A02: 2164594-2177528 Brassica rapa FPsc
Brara.B00467 5.0kb upstream 5.0kb upstream 5000 false A02: 2172529-2177528 Brassica rapa FPsc
Brara.B00467 5.0kb downstream 5.0kb downstream 12935 true A02: 2159594-2172528 Brassica rapa FPsc
Brara.B00467 5.0kb downstream 5.0kb downstream 5000 false A02: 2159594-2164593 Brassica rapa FPsc
Brara.B00467 10.0kb upstream 10.0kb upstream 17935 true A02: 2164594-2182528 Brassica rapa FPsc
Brara.B00467 10.0kb upstream 10.0kb upstream 10000 false A02: 2172529-2182528 Brassica rapa FPsc
Brara.B00467 10.0kb downstream 10.0kb downstream 17935 true A02: 2154594-2172528 Brassica rapa FPsc
Brara.B00467 10.0kb downstream 10.0kb downstream 10000 false A02: 2154594-2164593 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122355915 5261 Brassicaceae View MSA
123794080 5264 Brassicales-Malvales View MSA
124291900 5266 SBM View MSA
124252791 5268 Malvidae View MSA
124051035 5270 Rosid View MSA
123749286 5271 Pentapetalae View MSA
122796440 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier