Gene : Brara.H00601 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  601
Name:  ? Brara.H00601 Secondary Identifier:  ? PAC:30649819
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-2161 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3841 Brassica rapa FPsc pathologic  
BrapaFPsc SER-GLYSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00601 0.5kb upstream 0.5kb upstream 3213 true A08: 7418283-7421495 Brassica rapa FPsc
Brara.H00601 0.5kb upstream 0.5kb upstream 500 false A08: 7418283-7418782 Brassica rapa FPsc
Brara.H00601 0.5kb downstream 0.5kb downstream 3213 true A08: 7418783-7421995 Brassica rapa FPsc
Brara.H00601 0.5kb downstream 0.5kb downstream 500 false A08: 7421496-7421995 Brassica rapa FPsc
Brara.H00601 1.0kb upstream 1.0kb upstream 3713 true A08: 7417783-7421495 Brassica rapa FPsc
Brara.H00601 1.0kb upstream 1.0kb upstream 1000 false A08: 7417783-7418782 Brassica rapa FPsc
Brara.H00601 1.0kb downstream 1.0kb downstream 3713 true A08: 7418783-7422495 Brassica rapa FPsc
Brara.H00601 1.0kb downstream 1.0kb downstream 1000 false A08: 7421496-7422495 Brassica rapa FPsc
Brara.H00601 2.0kb upstream 2.0kb upstream 4713 true A08: 7416783-7421495 Brassica rapa FPsc
Brara.H00601 2.0kb upstream 2.0kb upstream 2000 false A08: 7416783-7418782 Brassica rapa FPsc
Brara.H00601 2.0kb downstream 2.0kb downstream 4713 true A08: 7418783-7423495 Brassica rapa FPsc
Brara.H00601 2.0kb downstream 2.0kb downstream 2000 false A08: 7421496-7423495 Brassica rapa FPsc
Brara.H00601 5.0kb upstream 5.0kb upstream 7713 true A08: 7413783-7421495 Brassica rapa FPsc
Brara.H00601 5.0kb upstream 5.0kb upstream 5000 false A08: 7413783-7418782 Brassica rapa FPsc
Brara.H00601 5.0kb downstream 5.0kb downstream 7713 true A08: 7418783-7426495 Brassica rapa FPsc
Brara.H00601 5.0kb downstream 5.0kb downstream 5000 false A08: 7421496-7426495 Brassica rapa FPsc
Brara.H00601 10.0kb upstream 10.0kb upstream 12713 true A08: 7408783-7421495 Brassica rapa FPsc
Brara.H00601 10.0kb upstream 10.0kb upstream 10000 false A08: 7408783-7418782 Brassica rapa FPsc
Brara.H00601 10.0kb downstream 10.0kb downstream 12713 true A08: 7418783-7431495 Brassica rapa FPsc
Brara.H00601 10.0kb downstream 10.0kb downstream 10000 false A08: 7421496-7431495 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374952 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier