Gene : Brara.H00523 B. rapa FPsc v1.3
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  523
Name:  ? Brara.H00523 Secondary Identifier:  ? PAC:30647035
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc BRANCHED-CHAIN-AA-SYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc LEUSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00523 0.5kb upstream 0.5kb upstream 4111 true A08: 5926359-5930469 Brassica rapa FPsc
Brara.H00523 0.5kb upstream 0.5kb upstream 500 false A08: 5929970-5930469 Brassica rapa FPsc
Brara.H00523 0.5kb downstream 0.5kb downstream 4111 true A08: 5925859-5929969 Brassica rapa FPsc
Brara.H00523 0.5kb downstream 0.5kb downstream 500 false A08: 5925859-5926358 Brassica rapa FPsc
Brara.H00523 1.0kb upstream 1.0kb upstream 4611 true A08: 5926359-5930969 Brassica rapa FPsc
Brara.H00523 1.0kb upstream 1.0kb upstream 1000 false A08: 5929970-5930969 Brassica rapa FPsc
Brara.H00523 1.0kb downstream 1.0kb downstream 4611 true A08: 5925359-5929969 Brassica rapa FPsc
Brara.H00523 1.0kb downstream 1.0kb downstream 1000 false A08: 5925359-5926358 Brassica rapa FPsc
Brara.H00523 2.0kb upstream 2.0kb upstream 5611 true A08: 5926359-5931969 Brassica rapa FPsc
Brara.H00523 2.0kb upstream 2.0kb upstream 2000 false A08: 5929970-5931969 Brassica rapa FPsc
Brara.H00523 2.0kb downstream 2.0kb downstream 5611 true A08: 5924359-5929969 Brassica rapa FPsc
Brara.H00523 2.0kb downstream 2.0kb downstream 2000 false A08: 5924359-5926358 Brassica rapa FPsc
Brara.H00523 5.0kb upstream 5.0kb upstream 8611 true A08: 5926359-5934969 Brassica rapa FPsc
Brara.H00523 5.0kb upstream 5.0kb upstream 5000 false A08: 5929970-5934969 Brassica rapa FPsc
Brara.H00523 5.0kb downstream 5.0kb downstream 8611 true A08: 5921359-5929969 Brassica rapa FPsc
Brara.H00523 5.0kb downstream 5.0kb downstream 5000 false A08: 5921359-5926358 Brassica rapa FPsc
Brara.H00523 10.0kb upstream 10.0kb upstream 13611 true A08: 5926359-5939969 Brassica rapa FPsc
Brara.H00523 10.0kb upstream 10.0kb upstream 10000 false A08: 5929970-5939969 Brassica rapa FPsc
Brara.H00523 10.0kb downstream 10.0kb downstream 13611 true A08: 5916359-5929969 Brassica rapa FPsc
Brara.H00523 10.0kb downstream 10.0kb downstream 10000 false A08: 5916359-5926358 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376626 5261 Brassicaceae View MSA
123838353 5264 Brassicales-Malvales View MSA
124346473 5266 SBM View MSA
124238803 5268 Malvidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier