Gene : Brara.H00539 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  539
Name:  ? Brara.H00539 Secondary Identifier:  ? PAC:30648745
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CALVIN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00539 0.5kb upstream 0.5kb upstream 3256 true A08: 6271039-6274294 Brassica rapa FPsc
Brara.H00539 0.5kb upstream 0.5kb upstream 500 false A08: 6271039-6271538 Brassica rapa FPsc
Brara.H00539 0.5kb downstream 0.5kb downstream 3256 true A08: 6271539-6274794 Brassica rapa FPsc
Brara.H00539 0.5kb downstream 0.5kb downstream 500 false A08: 6274295-6274794 Brassica rapa FPsc
Brara.H00539 1.0kb upstream 1.0kb upstream 3756 true A08: 6270539-6274294 Brassica rapa FPsc
Brara.H00539 1.0kb upstream 1.0kb upstream 1000 false A08: 6270539-6271538 Brassica rapa FPsc
Brara.H00539 1.0kb downstream 1.0kb downstream 3756 true A08: 6271539-6275294 Brassica rapa FPsc
Brara.H00539 1.0kb downstream 1.0kb downstream 1000 false A08: 6274295-6275294 Brassica rapa FPsc
Brara.H00539 2.0kb upstream 2.0kb upstream 4756 true A08: 6269539-6274294 Brassica rapa FPsc
Brara.H00539 2.0kb upstream 2.0kb upstream 2000 false A08: 6269539-6271538 Brassica rapa FPsc
Brara.H00539 2.0kb downstream 2.0kb downstream 4756 true A08: 6271539-6276294 Brassica rapa FPsc
Brara.H00539 2.0kb downstream 2.0kb downstream 2000 false A08: 6274295-6276294 Brassica rapa FPsc
Brara.H00539 5.0kb upstream 5.0kb upstream 7756 true A08: 6266539-6274294 Brassica rapa FPsc
Brara.H00539 5.0kb upstream 5.0kb upstream 5000 false A08: 6266539-6271538 Brassica rapa FPsc
Brara.H00539 5.0kb downstream 5.0kb downstream 7756 true A08: 6271539-6279294 Brassica rapa FPsc
Brara.H00539 5.0kb downstream 5.0kb downstream 5000 false A08: 6274295-6279294 Brassica rapa FPsc
Brara.H00539 10.0kb upstream 10.0kb upstream 12756 true A08: 6261539-6274294 Brassica rapa FPsc
Brara.H00539 10.0kb upstream 10.0kb upstream 10000 false A08: 6261539-6271538 Brassica rapa FPsc
Brara.H00539 10.0kb downstream 10.0kb downstream 12756 true A08: 6271539-6284294 Brassica rapa FPsc
Brara.H00539 10.0kb downstream 10.0kb downstream 10000 false A08: 6274295-6284294 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369088 5261 Brassicaceae View MSA
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier