Gene : Brara.H00553 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  553
Name:  ? Brara.H00553 Secondary Identifier:  ? PAC:30647986
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-101 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00553 0.5kb upstream 0.5kb upstream 1824 true A08: 6495856-6497679 Brassica rapa FPsc
Brara.H00553 0.5kb upstream 0.5kb upstream 500 false A08: 6495856-6496355 Brassica rapa FPsc
Brara.H00553 0.5kb downstream 0.5kb downstream 1824 true A08: 6496356-6498179 Brassica rapa FPsc
Brara.H00553 0.5kb downstream 0.5kb downstream 500 false A08: 6497680-6498179 Brassica rapa FPsc
Brara.H00553 1.0kb upstream 1.0kb upstream 2324 true A08: 6495356-6497679 Brassica rapa FPsc
Brara.H00553 1.0kb upstream 1.0kb upstream 1000 false A08: 6495356-6496355 Brassica rapa FPsc
Brara.H00553 1.0kb downstream 1.0kb downstream 2324 true A08: 6496356-6498679 Brassica rapa FPsc
Brara.H00553 1.0kb downstream 1.0kb downstream 1000 false A08: 6497680-6498679 Brassica rapa FPsc
Brara.H00553 2.0kb upstream 2.0kb upstream 3324 true A08: 6494356-6497679 Brassica rapa FPsc
Brara.H00553 2.0kb upstream 2.0kb upstream 2000 false A08: 6494356-6496355 Brassica rapa FPsc
Brara.H00553 2.0kb downstream 2.0kb downstream 3324 true A08: 6496356-6499679 Brassica rapa FPsc
Brara.H00553 2.0kb downstream 2.0kb downstream 2000 false A08: 6497680-6499679 Brassica rapa FPsc
Brara.H00553 5.0kb upstream 5.0kb upstream 6324 true A08: 6491356-6497679 Brassica rapa FPsc
Brara.H00553 5.0kb upstream 5.0kb upstream 5000 false A08: 6491356-6496355 Brassica rapa FPsc
Brara.H00553 5.0kb downstream 5.0kb downstream 6324 true A08: 6496356-6502679 Brassica rapa FPsc
Brara.H00553 5.0kb downstream 5.0kb downstream 5000 false A08: 6497680-6502679 Brassica rapa FPsc
Brara.H00553 10.0kb upstream 10.0kb upstream 11324 true A08: 6486356-6497679 Brassica rapa FPsc
Brara.H00553 10.0kb upstream 10.0kb upstream 10000 false A08: 6486356-6496355 Brassica rapa FPsc
Brara.H00553 10.0kb downstream 10.0kb downstream 11324 true A08: 6496356-6507679 Brassica rapa FPsc
Brara.H00553 10.0kb downstream 10.0kb downstream 10000 false A08: 6497680-6507679 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122378869 5261 Brassicaceae View MSA
123838077 5264 Brassicales-Malvales View MSA
124343130 5266 SBM View MSA
124243038 5268 Malvidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier