Gene : Brara.B01301 B. rapa FPsc v1.3
Defline:  (1 of 20) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1301
Name:  ? Brara.B01301 Secondary Identifier:  ? PAC:30608511
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01301 0.5kb upstream 0.5kb upstream 2043 true A02: 6880358-6882400 Brassica rapa FPsc
Brara.B01301 0.5kb upstream 0.5kb upstream 500 false A02: 6881901-6882400 Brassica rapa FPsc
Brara.B01301 0.5kb downstream 0.5kb downstream 2043 true A02: 6879858-6881900 Brassica rapa FPsc
Brara.B01301 0.5kb downstream 0.5kb downstream 500 false A02: 6879858-6880357 Brassica rapa FPsc
Brara.B01301 1.0kb upstream 1.0kb upstream 2543 true A02: 6880358-6882900 Brassica rapa FPsc
Brara.B01301 1.0kb upstream 1.0kb upstream 1000 false A02: 6881901-6882900 Brassica rapa FPsc
Brara.B01301 1.0kb downstream 1.0kb downstream 2543 true A02: 6879358-6881900 Brassica rapa FPsc
Brara.B01301 1.0kb downstream 1.0kb downstream 1000 false A02: 6879358-6880357 Brassica rapa FPsc
Brara.B01301 2.0kb upstream 2.0kb upstream 3543 true A02: 6880358-6883900 Brassica rapa FPsc
Brara.B01301 2.0kb upstream 2.0kb upstream 2000 false A02: 6881901-6883900 Brassica rapa FPsc
Brara.B01301 2.0kb downstream 2.0kb downstream 3543 true A02: 6878358-6881900 Brassica rapa FPsc
Brara.B01301 2.0kb downstream 2.0kb downstream 2000 false A02: 6878358-6880357 Brassica rapa FPsc
Brara.B01301 5.0kb upstream 5.0kb upstream 6543 true A02: 6880358-6886900 Brassica rapa FPsc
Brara.B01301 5.0kb upstream 5.0kb upstream 5000 false A02: 6881901-6886900 Brassica rapa FPsc
Brara.B01301 5.0kb downstream 5.0kb downstream 6543 true A02: 6875358-6881900 Brassica rapa FPsc
Brara.B01301 5.0kb downstream 5.0kb downstream 5000 false A02: 6875358-6880357 Brassica rapa FPsc
Brara.B01301 10.0kb upstream 10.0kb upstream 11543 true A02: 6880358-6891900 Brassica rapa FPsc
Brara.B01301 10.0kb upstream 10.0kb upstream 10000 false A02: 6881901-6891900 Brassica rapa FPsc
Brara.B01301 10.0kb downstream 10.0kb downstream 11543 true A02: 6870358-6881900 Brassica rapa FPsc
Brara.B01301 10.0kb downstream 10.0kb downstream 10000 false A02: 6870358-6880357 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377012 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier