Gene : Brara.H01911 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  1911
Name:  ? Brara.H01911 Secondary Identifier:  ? PAC:30649344
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5173 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PYRUVDEHYD-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H01911 0.5kb upstream 0.5kb upstream 2823 true A08: 17831372-17834194 Brassica rapa FPsc
Brara.H01911 0.5kb upstream 0.5kb upstream 500 false A08: 17831372-17831871 Brassica rapa FPsc
Brara.H01911 0.5kb downstream 0.5kb downstream 2823 true A08: 17831872-17834694 Brassica rapa FPsc
Brara.H01911 0.5kb downstream 0.5kb downstream 500 false A08: 17834195-17834694 Brassica rapa FPsc
Brara.H01911 1.0kb upstream 1.0kb upstream 3323 true A08: 17830872-17834194 Brassica rapa FPsc
Brara.H01911 1.0kb upstream 1.0kb upstream 1000 false A08: 17830872-17831871 Brassica rapa FPsc
Brara.H01911 1.0kb downstream 1.0kb downstream 3323 true A08: 17831872-17835194 Brassica rapa FPsc
Brara.H01911 1.0kb downstream 1.0kb downstream 1000 false A08: 17834195-17835194 Brassica rapa FPsc
Brara.H01911 2.0kb upstream 2.0kb upstream 4323 true A08: 17829872-17834194 Brassica rapa FPsc
Brara.H01911 2.0kb upstream 2.0kb upstream 2000 false A08: 17829872-17831871 Brassica rapa FPsc
Brara.H01911 2.0kb downstream 2.0kb downstream 4323 true A08: 17831872-17836194 Brassica rapa FPsc
Brara.H01911 2.0kb downstream 2.0kb downstream 2000 false A08: 17834195-17836194 Brassica rapa FPsc
Brara.H01911 5.0kb upstream 5.0kb upstream 7323 true A08: 17826872-17834194 Brassica rapa FPsc
Brara.H01911 5.0kb upstream 5.0kb upstream 5000 false A08: 17826872-17831871 Brassica rapa FPsc
Brara.H01911 5.0kb downstream 5.0kb downstream 7323 true A08: 17831872-17839194 Brassica rapa FPsc
Brara.H01911 5.0kb downstream 5.0kb downstream 5000 false A08: 17834195-17839194 Brassica rapa FPsc
Brara.H01911 10.0kb upstream 10.0kb upstream 12323 true A08: 17821872-17834194 Brassica rapa FPsc
Brara.H01911 10.0kb upstream 10.0kb upstream 10000 false A08: 17821872-17831871 Brassica rapa FPsc
Brara.H01911 10.0kb downstream 10.0kb downstream 12323 true A08: 17831872-17844194 Brassica rapa FPsc
Brara.H01911 10.0kb downstream 10.0kb downstream 10000 false A08: 17834195-17844194 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365093 5261 Brassicaceae View MSA
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier