Gene : Brara.H01745 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  1745
Name:  ? Brara.H01745 Secondary Identifier:  ? PAC:30649830
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-2161 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3841 Brassica rapa FPsc pathologic  
BrapaFPsc SER-GLYSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H01745 0.5kb upstream 0.5kb upstream 8651 true A08: 16943593-16952243 Brassica rapa FPsc
Brara.H01745 0.5kb upstream 0.5kb upstream 500 false A08: 16951744-16952243 Brassica rapa FPsc
Brara.H01745 0.5kb downstream 0.5kb downstream 8651 true A08: 16943093-16951743 Brassica rapa FPsc
Brara.H01745 0.5kb downstream 0.5kb downstream 500 false A08: 16943093-16943592 Brassica rapa FPsc
Brara.H01745 1.0kb upstream 1.0kb upstream 9151 true A08: 16943593-16952743 Brassica rapa FPsc
Brara.H01745 1.0kb upstream 1.0kb upstream 1000 false A08: 16951744-16952743 Brassica rapa FPsc
Brara.H01745 1.0kb downstream 1.0kb downstream 9151 true A08: 16942593-16951743 Brassica rapa FPsc
Brara.H01745 1.0kb downstream 1.0kb downstream 1000 false A08: 16942593-16943592 Brassica rapa FPsc
Brara.H01745 2.0kb upstream 2.0kb upstream 10151 true A08: 16943593-16953743 Brassica rapa FPsc
Brara.H01745 2.0kb upstream 2.0kb upstream 2000 false A08: 16951744-16953743 Brassica rapa FPsc
Brara.H01745 2.0kb downstream 2.0kb downstream 10151 true A08: 16941593-16951743 Brassica rapa FPsc
Brara.H01745 2.0kb downstream 2.0kb downstream 2000 false A08: 16941593-16943592 Brassica rapa FPsc
Brara.H01745 5.0kb upstream 5.0kb upstream 13151 true A08: 16943593-16956743 Brassica rapa FPsc
Brara.H01745 5.0kb upstream 5.0kb upstream 5000 false A08: 16951744-16956743 Brassica rapa FPsc
Brara.H01745 5.0kb downstream 5.0kb downstream 13151 true A08: 16938593-16951743 Brassica rapa FPsc
Brara.H01745 5.0kb downstream 5.0kb downstream 5000 false A08: 16938593-16943592 Brassica rapa FPsc
Brara.H01745 10.0kb upstream 10.0kb upstream 18151 true A08: 16943593-16961743 Brassica rapa FPsc
Brara.H01745 10.0kb upstream 10.0kb upstream 10000 false A08: 16951744-16961743 Brassica rapa FPsc
Brara.H01745 10.0kb downstream 10.0kb downstream 18151 true A08: 16933593-16951743 Brassica rapa FPsc
Brara.H01745 10.0kb downstream 10.0kb downstream 10000 false A08: 16933593-16943592 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363634 5261 Brassicaceae View MSA
123832063 5264 Brassicales-Malvales View MSA
124337498 5266 SBM View MSA
124238878 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier