Gene : Brara.E00101 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR33222:SF9 - PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC Genomic Order:  101
Name:  ? Brara.E00101 Secondary Identifier:  ? PAC:30624605
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-101 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E00101 0.5kb upstream 0.5kb upstream 2007 true A05: 592538-594544 Brassica rapa FPsc
Brara.E00101 0.5kb upstream 0.5kb upstream 500 false A05: 594045-594544 Brassica rapa FPsc
Brara.E00101 0.5kb downstream 0.5kb downstream 2007 true A05: 592038-594044 Brassica rapa FPsc
Brara.E00101 0.5kb downstream 0.5kb downstream 500 false A05: 592038-592537 Brassica rapa FPsc
Brara.E00101 1.0kb upstream 1.0kb upstream 2507 true A05: 592538-595044 Brassica rapa FPsc
Brara.E00101 1.0kb upstream 1.0kb upstream 1000 false A05: 594045-595044 Brassica rapa FPsc
Brara.E00101 1.0kb downstream 1.0kb downstream 2507 true A05: 591538-594044 Brassica rapa FPsc
Brara.E00101 1.0kb downstream 1.0kb downstream 1000 false A05: 591538-592537 Brassica rapa FPsc
Brara.E00101 2.0kb upstream 2.0kb upstream 3507 true A05: 592538-596044 Brassica rapa FPsc
Brara.E00101 2.0kb upstream 2.0kb upstream 2000 false A05: 594045-596044 Brassica rapa FPsc
Brara.E00101 2.0kb downstream 2.0kb downstream 3507 true A05: 590538-594044 Brassica rapa FPsc
Brara.E00101 2.0kb downstream 2.0kb downstream 2000 false A05: 590538-592537 Brassica rapa FPsc
Brara.E00101 5.0kb upstream 5.0kb upstream 6507 true A05: 592538-599044 Brassica rapa FPsc
Brara.E00101 5.0kb upstream 5.0kb upstream 5000 false A05: 594045-599044 Brassica rapa FPsc
Brara.E00101 5.0kb downstream 5.0kb downstream 6507 true A05: 587538-594044 Brassica rapa FPsc
Brara.E00101 5.0kb downstream 5.0kb downstream 5000 false A05: 587538-592537 Brassica rapa FPsc
Brara.E00101 10.0kb upstream 10.0kb upstream 11507 true A05: 592538-604044 Brassica rapa FPsc
Brara.E00101 10.0kb upstream 10.0kb upstream 10000 false A05: 594045-604044 Brassica rapa FPsc
Brara.E00101 10.0kb downstream 10.0kb downstream 11507 true A05: 582538-594044 Brassica rapa FPsc
Brara.E00101 10.0kb downstream 10.0kb downstream 10000 false A05: 582538-592537 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367981 5261 Brassicaceae View MSA
123829580 5264 Brassicales-Malvales View MSA
124343674 5266 SBM View MSA
124248900 5268 Malvidae View MSA
124068427 5270 Rosid View MSA
123747086 5271 Pentapetalae View MSA
122793406 5272 Eudicot View MSA
122042391 5273 Angiosperm View MSA
121347672 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier