Gene : Brara.B00995 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  995
Name:  ? Brara.B00995 Secondary Identifier:  ? PAC:30609002
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00995 0.5kb upstream 0.5kb upstream 4663 true A02: 4786615-4791277 Brassica rapa FPsc
Brara.B00995 0.5kb upstream 0.5kb upstream 500 false A02: 4790778-4791277 Brassica rapa FPsc
Brara.B00995 0.5kb downstream 0.5kb downstream 4663 true A02: 4786115-4790777 Brassica rapa FPsc
Brara.B00995 0.5kb downstream 0.5kb downstream 500 false A02: 4786115-4786614 Brassica rapa FPsc
Brara.B00995 1.0kb upstream 1.0kb upstream 5163 true A02: 4786615-4791777 Brassica rapa FPsc
Brara.B00995 1.0kb upstream 1.0kb upstream 1000 false A02: 4790778-4791777 Brassica rapa FPsc
Brara.B00995 1.0kb downstream 1.0kb downstream 5163 true A02: 4785615-4790777 Brassica rapa FPsc
Brara.B00995 1.0kb downstream 1.0kb downstream 1000 false A02: 4785615-4786614 Brassica rapa FPsc
Brara.B00995 2.0kb upstream 2.0kb upstream 6163 true A02: 4786615-4792777 Brassica rapa FPsc
Brara.B00995 2.0kb upstream 2.0kb upstream 2000 false A02: 4790778-4792777 Brassica rapa FPsc
Brara.B00995 2.0kb downstream 2.0kb downstream 6163 true A02: 4784615-4790777 Brassica rapa FPsc
Brara.B00995 2.0kb downstream 2.0kb downstream 2000 false A02: 4784615-4786614 Brassica rapa FPsc
Brara.B00995 5.0kb upstream 5.0kb upstream 9163 true A02: 4786615-4795777 Brassica rapa FPsc
Brara.B00995 5.0kb upstream 5.0kb upstream 5000 false A02: 4790778-4795777 Brassica rapa FPsc
Brara.B00995 5.0kb downstream 5.0kb downstream 9163 true A02: 4781615-4790777 Brassica rapa FPsc
Brara.B00995 5.0kb downstream 5.0kb downstream 5000 false A02: 4781615-4786614 Brassica rapa FPsc
Brara.B00995 10.0kb upstream 10.0kb upstream 14163 true A02: 4786615-4800777 Brassica rapa FPsc
Brara.B00995 10.0kb upstream 10.0kb upstream 10000 false A02: 4790778-4800777 Brassica rapa FPsc
Brara.B00995 10.0kb downstream 10.0kb downstream 14163 true A02: 4776615-4790777 Brassica rapa FPsc
Brara.B00995 10.0kb downstream 10.0kb downstream 10000 false A02: 4776615-4786614 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361504 5261 Brassicaceae View MSA
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier