Gene : Brara.B01072 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11035 - PTPLA DOMAIN PROTEIN Genomic Order:  1072
Name:  ? Brara.B01072 Secondary Identifier:  ? PAC:30609257
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5080 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6433 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6598 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7036 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7601 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7606 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7619 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01072 0.5kb upstream 0.5kb upstream 2931 true A02: 5330585-5333515 Brassica rapa FPsc
Brara.B01072 0.5kb upstream 0.5kb upstream 500 false A02: 5330585-5331084 Brassica rapa FPsc
Brara.B01072 0.5kb downstream 0.5kb downstream 2931 true A02: 5331085-5334015 Brassica rapa FPsc
Brara.B01072 0.5kb downstream 0.5kb downstream 500 false A02: 5333516-5334015 Brassica rapa FPsc
Brara.B01072 1.0kb upstream 1.0kb upstream 3431 true A02: 5330085-5333515 Brassica rapa FPsc
Brara.B01072 1.0kb upstream 1.0kb upstream 1000 false A02: 5330085-5331084 Brassica rapa FPsc
Brara.B01072 1.0kb downstream 1.0kb downstream 3431 true A02: 5331085-5334515 Brassica rapa FPsc
Brara.B01072 1.0kb downstream 1.0kb downstream 1000 false A02: 5333516-5334515 Brassica rapa FPsc
Brara.B01072 2.0kb upstream 2.0kb upstream 4431 true A02: 5329085-5333515 Brassica rapa FPsc
Brara.B01072 2.0kb upstream 2.0kb upstream 2000 false A02: 5329085-5331084 Brassica rapa FPsc
Brara.B01072 2.0kb downstream 2.0kb downstream 4431 true A02: 5331085-5335515 Brassica rapa FPsc
Brara.B01072 2.0kb downstream 2.0kb downstream 2000 false A02: 5333516-5335515 Brassica rapa FPsc
Brara.B01072 5.0kb upstream 5.0kb upstream 7431 true A02: 5326085-5333515 Brassica rapa FPsc
Brara.B01072 5.0kb upstream 5.0kb upstream 5000 false A02: 5326085-5331084 Brassica rapa FPsc
Brara.B01072 5.0kb downstream 5.0kb downstream 7431 true A02: 5331085-5338515 Brassica rapa FPsc
Brara.B01072 5.0kb downstream 5.0kb downstream 5000 false A02: 5333516-5338515 Brassica rapa FPsc
Brara.B01072 10.0kb upstream 10.0kb upstream 12431 true A02: 5321085-5333515 Brassica rapa FPsc
Brara.B01072 10.0kb upstream 10.0kb upstream 10000 false A02: 5321085-5331084 Brassica rapa FPsc
Brara.B01072 10.0kb downstream 10.0kb downstream 12431 true A02: 5331085-5343515 Brassica rapa FPsc
Brara.B01072 10.0kb downstream 10.0kb downstream 10000 false A02: 5333516-5343515 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367081 5261 Brassicaceae View MSA
123836753 5264 Brassicales-Malvales View MSA
124349665 5266 SBM View MSA
124243174 5268 Malvidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier