Gene : Brara.B00839 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR31321:SF17 - PECTINESTERASE 53-RELATED Genomic Order:  839
Name:  ? Brara.B00839 Secondary Identifier:  ? PAC:30610510
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00839 0.5kb upstream 0.5kb upstream 3181 true A02: 3979666-3982846 Brassica rapa FPsc
Brara.B00839 0.5kb upstream 0.5kb upstream 500 false A02: 3979666-3980165 Brassica rapa FPsc
Brara.B00839 0.5kb downstream 0.5kb downstream 3181 true A02: 3980166-3983346 Brassica rapa FPsc
Brara.B00839 0.5kb downstream 0.5kb downstream 500 false A02: 3982847-3983346 Brassica rapa FPsc
Brara.B00839 1.0kb upstream 1.0kb upstream 3681 true A02: 3979166-3982846 Brassica rapa FPsc
Brara.B00839 1.0kb upstream 1.0kb upstream 1000 false A02: 3979166-3980165 Brassica rapa FPsc
Brara.B00839 1.0kb downstream 1.0kb downstream 3681 true A02: 3980166-3983846 Brassica rapa FPsc
Brara.B00839 1.0kb downstream 1.0kb downstream 1000 false A02: 3982847-3983846 Brassica rapa FPsc
Brara.B00839 2.0kb upstream 2.0kb upstream 4681 true A02: 3978166-3982846 Brassica rapa FPsc
Brara.B00839 2.0kb upstream 2.0kb upstream 2000 false A02: 3978166-3980165 Brassica rapa FPsc
Brara.B00839 2.0kb downstream 2.0kb downstream 4681 true A02: 3980166-3984846 Brassica rapa FPsc
Brara.B00839 2.0kb downstream 2.0kb downstream 2000 false A02: 3982847-3984846 Brassica rapa FPsc
Brara.B00839 5.0kb upstream 5.0kb upstream 7681 true A02: 3975166-3982846 Brassica rapa FPsc
Brara.B00839 5.0kb upstream 5.0kb upstream 5000 false A02: 3975166-3980165 Brassica rapa FPsc
Brara.B00839 5.0kb downstream 5.0kb downstream 7681 true A02: 3980166-3987846 Brassica rapa FPsc
Brara.B00839 5.0kb downstream 5.0kb downstream 5000 false A02: 3982847-3987846 Brassica rapa FPsc
Brara.B00839 10.0kb upstream 10.0kb upstream 12681 true A02: 3970166-3982846 Brassica rapa FPsc
Brara.B00839 10.0kb upstream 10.0kb upstream 10000 false A02: 3970166-3980165 Brassica rapa FPsc
Brara.B00839 10.0kb downstream 10.0kb downstream 12681 true A02: 3980166-3992846 Brassica rapa FPsc
Brara.B00839 10.0kb downstream 10.0kb downstream 10000 false A02: 3982847-3992846 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373168 5261 Brassicaceae View MSA
123835653 5264 Brassicales-Malvales View MSA
124350077 5266 SBM View MSA
124237911 5268 Malvidae View MSA
124072507 5270 Rosid View MSA
123749386 5271 Pentapetalae View MSA
122794986 5272 Eudicot View MSA
122041979 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier