Gene : Brara.B00865 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR22769:SF7 - PEROXISOMAL NADH PYROPHOSPHATASE NUDT12 Genomic Order:  865
Name:  ? Brara.B00865 Secondary Identifier:  ? PAC:30607772
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5381 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00865 0.5kb upstream 0.5kb upstream 2280 true A02: 4073308-4075587 Brassica rapa FPsc
Brara.B00865 0.5kb upstream 0.5kb upstream 500 false A02: 4073308-4073807 Brassica rapa FPsc
Brara.B00865 0.5kb downstream 0.5kb downstream 2280 true A02: 4073808-4076087 Brassica rapa FPsc
Brara.B00865 0.5kb downstream 0.5kb downstream 500 false A02: 4075588-4076087 Brassica rapa FPsc
Brara.B00865 1.0kb upstream 1.0kb upstream 2780 true A02: 4072808-4075587 Brassica rapa FPsc
Brara.B00865 1.0kb upstream 1.0kb upstream 1000 false A02: 4072808-4073807 Brassica rapa FPsc
Brara.B00865 1.0kb downstream 1.0kb downstream 2780 true A02: 4073808-4076587 Brassica rapa FPsc
Brara.B00865 1.0kb downstream 1.0kb downstream 1000 false A02: 4075588-4076587 Brassica rapa FPsc
Brara.B00865 2.0kb upstream 2.0kb upstream 3780 true A02: 4071808-4075587 Brassica rapa FPsc
Brara.B00865 2.0kb upstream 2.0kb upstream 2000 false A02: 4071808-4073807 Brassica rapa FPsc
Brara.B00865 2.0kb downstream 2.0kb downstream 3780 true A02: 4073808-4077587 Brassica rapa FPsc
Brara.B00865 2.0kb downstream 2.0kb downstream 2000 false A02: 4075588-4077587 Brassica rapa FPsc
Brara.B00865 5.0kb upstream 5.0kb upstream 6780 true A02: 4068808-4075587 Brassica rapa FPsc
Brara.B00865 5.0kb upstream 5.0kb upstream 5000 false A02: 4068808-4073807 Brassica rapa FPsc
Brara.B00865 5.0kb downstream 5.0kb downstream 6780 true A02: 4073808-4080587 Brassica rapa FPsc
Brara.B00865 5.0kb downstream 5.0kb downstream 5000 false A02: 4075588-4080587 Brassica rapa FPsc
Brara.B00865 10.0kb upstream 10.0kb upstream 11780 true A02: 4063808-4075587 Brassica rapa FPsc
Brara.B00865 10.0kb upstream 10.0kb upstream 10000 false A02: 4063808-4073807 Brassica rapa FPsc
Brara.B00865 10.0kb downstream 10.0kb downstream 11780 true A02: 4073808-4085587 Brassica rapa FPsc
Brara.B00865 10.0kb downstream 10.0kb downstream 10000 false A02: 4075588-4085587 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344765 5261 Brassicaceae Singleton cluster - no MSA
123784719 5264 Brassicales-Malvales Singleton cluster - no MSA
124350331 5266 SBM View MSA
124243566 5268 Malvidae View MSA
124065402 5270 Rosid View MSA
123742146 5271 Pentapetalae View MSA
122787569 5272 Eudicot View MSA
122041659 5273 Angiosperm View MSA
121345450 5274 Embryophyte View MSA
123427123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier