Gene : Brara.H03050 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR23382//PTHR23382:SF7 - MALATE DEHYDROGENASE Genomic Order:  3050
Name:  ? Brara.H03050 Secondary Identifier:  ? PAC:30648045
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H03050 0.5kb upstream 0.5kb upstream 2922 true A08: 22833152-22836073 Brassica rapa FPsc
Brara.H03050 0.5kb upstream 0.5kb upstream 500 false A08: 22833152-22833651 Brassica rapa FPsc
Brara.H03050 0.5kb downstream 0.5kb downstream 2922 true A08: 22833652-22836573 Brassica rapa FPsc
Brara.H03050 0.5kb downstream 0.5kb downstream 500 false A08: 22836074-22836573 Brassica rapa FPsc
Brara.H03050 1.0kb upstream 1.0kb upstream 3422 true A08: 22832652-22836073 Brassica rapa FPsc
Brara.H03050 1.0kb upstream 1.0kb upstream 1000 false A08: 22832652-22833651 Brassica rapa FPsc
Brara.H03050 1.0kb downstream 1.0kb downstream 3422 true A08: 22833652-22837073 Brassica rapa FPsc
Brara.H03050 1.0kb downstream 1.0kb downstream 1000 false A08: 22836074-22837073 Brassica rapa FPsc
Brara.H03050 2.0kb upstream 2.0kb upstream 4422 true A08: 22831652-22836073 Brassica rapa FPsc
Brara.H03050 2.0kb upstream 2.0kb upstream 2000 false A08: 22831652-22833651 Brassica rapa FPsc
Brara.H03050 2.0kb downstream 2.0kb downstream 4422 true A08: 22833652-22838073 Brassica rapa FPsc
Brara.H03050 2.0kb downstream 2.0kb downstream 2000 false A08: 22836074-22838073 Brassica rapa FPsc
Brara.H03050 5.0kb upstream 5.0kb upstream 7422 true A08: 22828652-22836073 Brassica rapa FPsc
Brara.H03050 5.0kb upstream 5.0kb upstream 5000 false A08: 22828652-22833651 Brassica rapa FPsc
Brara.H03050 5.0kb downstream 5.0kb downstream 7422 true A08: 22833652-22841073 Brassica rapa FPsc
Brara.H03050 5.0kb downstream 5.0kb downstream 5000 false A08: 22836074-22841073 Brassica rapa FPsc
Brara.H03050 10.0kb upstream 10.0kb upstream 12422 true A08: 22823652-22836073 Brassica rapa FPsc
Brara.H03050 10.0kb upstream 10.0kb upstream 10000 false A08: 22823652-22833651 Brassica rapa FPsc
Brara.H03050 10.0kb downstream 10.0kb downstream 12422 true A08: 22833652-22846073 Brassica rapa FPsc
Brara.H03050 10.0kb downstream 10.0kb downstream 10000 false A08: 22836074-22846073 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379151 5261 Brassicaceae View MSA
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier