Gene : Brara.E00336 B. rapa FPsc v1.3
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  336
Name:  ? Brara.E00336 Secondary Identifier:  ? PAC:30624954
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc BRANCHED-CHAIN-AA-SYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc LEUSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E00336 0.5kb upstream 0.5kb upstream 1848 true A05: 1855459-1857306 Brassica rapa FPsc
Brara.E00336 0.5kb upstream 0.5kb upstream 500 false A05: 1855459-1855958 Brassica rapa FPsc
Brara.E00336 0.5kb downstream 0.5kb downstream 1848 true A05: 1855959-1857806 Brassica rapa FPsc
Brara.E00336 0.5kb downstream 0.5kb downstream 500 false A05: 1857307-1857806 Brassica rapa FPsc
Brara.E00336 1.0kb upstream 1.0kb upstream 2348 true A05: 1854959-1857306 Brassica rapa FPsc
Brara.E00336 1.0kb upstream 1.0kb upstream 1000 false A05: 1854959-1855958 Brassica rapa FPsc
Brara.E00336 1.0kb downstream 1.0kb downstream 2348 true A05: 1855959-1858306 Brassica rapa FPsc
Brara.E00336 1.0kb downstream 1.0kb downstream 1000 false A05: 1857307-1858306 Brassica rapa FPsc
Brara.E00336 2.0kb upstream 2.0kb upstream 3348 true A05: 1853959-1857306 Brassica rapa FPsc
Brara.E00336 2.0kb upstream 2.0kb upstream 2000 false A05: 1853959-1855958 Brassica rapa FPsc
Brara.E00336 2.0kb downstream 2.0kb downstream 3348 true A05: 1855959-1859306 Brassica rapa FPsc
Brara.E00336 2.0kb downstream 2.0kb downstream 2000 false A05: 1857307-1859306 Brassica rapa FPsc
Brara.E00336 5.0kb upstream 5.0kb upstream 6348 true A05: 1850959-1857306 Brassica rapa FPsc
Brara.E00336 5.0kb upstream 5.0kb upstream 5000 false A05: 1850959-1855958 Brassica rapa FPsc
Brara.E00336 5.0kb downstream 5.0kb downstream 6348 true A05: 1855959-1862306 Brassica rapa FPsc
Brara.E00336 5.0kb downstream 5.0kb downstream 5000 false A05: 1857307-1862306 Brassica rapa FPsc
Brara.E00336 10.0kb upstream 10.0kb upstream 11348 true A05: 1845959-1857306 Brassica rapa FPsc
Brara.E00336 10.0kb upstream 10.0kb upstream 10000 false A05: 1845959-1855958 Brassica rapa FPsc
Brara.E00336 10.0kb downstream 10.0kb downstream 11348 true A05: 1855959-1867306 Brassica rapa FPsc
Brara.E00336 10.0kb downstream 10.0kb downstream 10000 false A05: 1857307-1867306 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040980 5273 Angiosperm View MSA
122349481 5261 Brassicaceae Singleton cluster - no MSA
123788661 5264 Brassicales-Malvales Singleton cluster - no MSA
124286682 5266 SBM Singleton cluster - no MSA
124250878 5268 Malvidae View MSA
124068442 5270 Rosid View MSA
123736502 5271 Pentapetalae View MSA
122789957 5272 Eudicot View MSA
121345878 5274 Embryophyte View MSA
123423763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier