Gene : Brara.B01730 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11771:SF60 - LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  1730
Name:  ? Brara.B01730 Secondary Identifier:  ? PAC:30607369
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5409 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5410 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-735 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01730 0.5kb upstream 0.5kb upstream 9427 true A02: 10127863-10137289 Brassica rapa FPsc
Brara.B01730 0.5kb upstream 0.5kb upstream 500 false A02: 10127863-10128362 Brassica rapa FPsc
Brara.B01730 0.5kb downstream 0.5kb downstream 9427 true A02: 10128363-10137789 Brassica rapa FPsc
Brara.B01730 0.5kb downstream 0.5kb downstream 500 false A02: 10137290-10137789 Brassica rapa FPsc
Brara.B01730 1.0kb upstream 1.0kb upstream 9927 true A02: 10127363-10137289 Brassica rapa FPsc
Brara.B01730 1.0kb upstream 1.0kb upstream 1000 false A02: 10127363-10128362 Brassica rapa FPsc
Brara.B01730 1.0kb downstream 1.0kb downstream 9927 true A02: 10128363-10138289 Brassica rapa FPsc
Brara.B01730 1.0kb downstream 1.0kb downstream 1000 false A02: 10137290-10138289 Brassica rapa FPsc
Brara.B01730 2.0kb upstream 2.0kb upstream 10927 true A02: 10126363-10137289 Brassica rapa FPsc
Brara.B01730 2.0kb upstream 2.0kb upstream 2000 false A02: 10126363-10128362 Brassica rapa FPsc
Brara.B01730 2.0kb downstream 2.0kb downstream 10927 true A02: 10128363-10139289 Brassica rapa FPsc
Brara.B01730 2.0kb downstream 2.0kb downstream 2000 false A02: 10137290-10139289 Brassica rapa FPsc
Brara.B01730 5.0kb upstream 5.0kb upstream 13927 true A02: 10123363-10137289 Brassica rapa FPsc
Brara.B01730 5.0kb upstream 5.0kb upstream 5000 false A02: 10123363-10128362 Brassica rapa FPsc
Brara.B01730 5.0kb downstream 5.0kb downstream 13927 true A02: 10128363-10142289 Brassica rapa FPsc
Brara.B01730 5.0kb downstream 5.0kb downstream 5000 false A02: 10137290-10142289 Brassica rapa FPsc
Brara.B01730 10.0kb upstream 10.0kb upstream 18927 true A02: 10118363-10137289 Brassica rapa FPsc
Brara.B01730 10.0kb upstream 10.0kb upstream 10000 false A02: 10118363-10128362 Brassica rapa FPsc
Brara.B01730 10.0kb downstream 10.0kb downstream 18927 true A02: 10128363-10147289 Brassica rapa FPsc
Brara.B01730 10.0kb downstream 10.0kb downstream 10000 false A02: 10137290-10147289 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344635 5261 Brassicaceae Singleton cluster - no MSA
123839661 5264 Brassicales-Malvales View MSA
124340250 5266 SBM View MSA
124236928 5268 Malvidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier