Gene : Brara.H02604 B. rapa FPsc v1.3
Defline:  (1 of 10) 1.2.1.12 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) / Triosephosphate dehydrogenase Genomic Order:  2604
Name:  ? Brara.H02604 Secondary Identifier:  ? PAC:30648391
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc SUCSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H02604 0.5kb upstream 0.5kb upstream 3092 true A08: 21057712-21060803 Brassica rapa FPsc
Brara.H02604 0.5kb upstream 0.5kb upstream 500 false A08: 21057712-21058211 Brassica rapa FPsc
Brara.H02604 0.5kb downstream 0.5kb downstream 3092 true A08: 21058212-21061303 Brassica rapa FPsc
Brara.H02604 0.5kb downstream 0.5kb downstream 500 false A08: 21060804-21061303 Brassica rapa FPsc
Brara.H02604 1.0kb upstream 1.0kb upstream 3592 true A08: 21057212-21060803 Brassica rapa FPsc
Brara.H02604 1.0kb upstream 1.0kb upstream 1000 false A08: 21057212-21058211 Brassica rapa FPsc
Brara.H02604 1.0kb downstream 1.0kb downstream 3592 true A08: 21058212-21061803 Brassica rapa FPsc
Brara.H02604 1.0kb downstream 1.0kb downstream 1000 false A08: 21060804-21061803 Brassica rapa FPsc
Brara.H02604 2.0kb upstream 2.0kb upstream 4592 true A08: 21056212-21060803 Brassica rapa FPsc
Brara.H02604 2.0kb upstream 2.0kb upstream 2000 false A08: 21056212-21058211 Brassica rapa FPsc
Brara.H02604 2.0kb downstream 2.0kb downstream 4592 true A08: 21058212-21062803 Brassica rapa FPsc
Brara.H02604 2.0kb downstream 2.0kb downstream 2000 false A08: 21060804-21062803 Brassica rapa FPsc
Brara.H02604 5.0kb upstream 5.0kb upstream 7592 true A08: 21053212-21060803 Brassica rapa FPsc
Brara.H02604 5.0kb upstream 5.0kb upstream 5000 false A08: 21053212-21058211 Brassica rapa FPsc
Brara.H02604 5.0kb downstream 5.0kb downstream 7592 true A08: 21058212-21065803 Brassica rapa FPsc
Brara.H02604 5.0kb downstream 5.0kb downstream 5000 false A08: 21060804-21065803 Brassica rapa FPsc
Brara.H02604 10.0kb upstream 10.0kb upstream 12592 true A08: 21048212-21060803 Brassica rapa FPsc
Brara.H02604 10.0kb upstream 10.0kb upstream 10000 false A08: 21048212-21058211 Brassica rapa FPsc
Brara.H02604 10.0kb downstream 10.0kb downstream 12592 true A08: 21058212-21070803 Brassica rapa FPsc
Brara.H02604 10.0kb downstream 10.0kb downstream 10000 false A08: 21060804-21070803 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122355214 5261 Brassicaceae Singleton cluster - no MSA
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier