Gene : Brara.H02612 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2612
Name:  ? Brara.H02612 Secondary Identifier:  ? PAC:30648886
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-735 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H02612 0.5kb upstream 0.5kb upstream 1642 true A08: 21096237-21097878 Brassica rapa FPsc
Brara.H02612 0.5kb upstream 0.5kb upstream 500 false A08: 21097379-21097878 Brassica rapa FPsc
Brara.H02612 0.5kb downstream 0.5kb downstream 1642 true A08: 21095737-21097378 Brassica rapa FPsc
Brara.H02612 0.5kb downstream 0.5kb downstream 500 false A08: 21095737-21096236 Brassica rapa FPsc
Brara.H02612 1.0kb upstream 1.0kb upstream 2142 true A08: 21096237-21098378 Brassica rapa FPsc
Brara.H02612 1.0kb upstream 1.0kb upstream 1000 false A08: 21097379-21098378 Brassica rapa FPsc
Brara.H02612 1.0kb downstream 1.0kb downstream 2142 true A08: 21095237-21097378 Brassica rapa FPsc
Brara.H02612 1.0kb downstream 1.0kb downstream 1000 false A08: 21095237-21096236 Brassica rapa FPsc
Brara.H02612 2.0kb upstream 2.0kb upstream 3142 true A08: 21096237-21099378 Brassica rapa FPsc
Brara.H02612 2.0kb upstream 2.0kb upstream 2000 false A08: 21097379-21099378 Brassica rapa FPsc
Brara.H02612 2.0kb downstream 2.0kb downstream 3142 true A08: 21094237-21097378 Brassica rapa FPsc
Brara.H02612 2.0kb downstream 2.0kb downstream 2000 false A08: 21094237-21096236 Brassica rapa FPsc
Brara.H02612 5.0kb upstream 5.0kb upstream 6142 true A08: 21096237-21102378 Brassica rapa FPsc
Brara.H02612 5.0kb upstream 5.0kb upstream 5000 false A08: 21097379-21102378 Brassica rapa FPsc
Brara.H02612 5.0kb downstream 5.0kb downstream 6142 true A08: 21091237-21097378 Brassica rapa FPsc
Brara.H02612 5.0kb downstream 5.0kb downstream 5000 false A08: 21091237-21096236 Brassica rapa FPsc
Brara.H02612 10.0kb upstream 10.0kb upstream 11142 true A08: 21096237-21107378 Brassica rapa FPsc
Brara.H02612 10.0kb upstream 10.0kb upstream 10000 false A08: 21097379-21107378 Brassica rapa FPsc
Brara.H02612 10.0kb downstream 10.0kb downstream 11142 true A08: 21086237-21097378 Brassica rapa FPsc
Brara.H02612 10.0kb downstream 10.0kb downstream 10000 false A08: 21086237-21096236 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380510 5261 Brassicaceae View MSA
123828498 5264 Brassicales-Malvales View MSA
124339249 5266 SBM View MSA
124252758 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier