Gene : Brara.B01547 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  1547
Name:  ? Brara.B01547 Secondary Identifier:  ? PAC:30609008
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01547 0.5kb upstream 0.5kb upstream 3685 true A02: 8628187-8631871 Brassica rapa FPsc
Brara.B01547 0.5kb upstream 0.5kb upstream 500 false A02: 8628187-8628686 Brassica rapa FPsc
Brara.B01547 0.5kb downstream 0.5kb downstream 3685 true A02: 8628687-8632371 Brassica rapa FPsc
Brara.B01547 0.5kb downstream 0.5kb downstream 500 false A02: 8631872-8632371 Brassica rapa FPsc
Brara.B01547 1.0kb upstream 1.0kb upstream 4185 true A02: 8627687-8631871 Brassica rapa FPsc
Brara.B01547 1.0kb upstream 1.0kb upstream 1000 false A02: 8627687-8628686 Brassica rapa FPsc
Brara.B01547 1.0kb downstream 1.0kb downstream 4185 true A02: 8628687-8632871 Brassica rapa FPsc
Brara.B01547 1.0kb downstream 1.0kb downstream 1000 false A02: 8631872-8632871 Brassica rapa FPsc
Brara.B01547 2.0kb upstream 2.0kb upstream 5185 true A02: 8626687-8631871 Brassica rapa FPsc
Brara.B01547 2.0kb upstream 2.0kb upstream 2000 false A02: 8626687-8628686 Brassica rapa FPsc
Brara.B01547 2.0kb downstream 2.0kb downstream 5185 true A02: 8628687-8633871 Brassica rapa FPsc
Brara.B01547 2.0kb downstream 2.0kb downstream 2000 false A02: 8631872-8633871 Brassica rapa FPsc
Brara.B01547 5.0kb upstream 5.0kb upstream 8185 true A02: 8623687-8631871 Brassica rapa FPsc
Brara.B01547 5.0kb upstream 5.0kb upstream 5000 false A02: 8623687-8628686 Brassica rapa FPsc
Brara.B01547 5.0kb downstream 5.0kb downstream 8185 true A02: 8628687-8636871 Brassica rapa FPsc
Brara.B01547 5.0kb downstream 5.0kb downstream 5000 false A02: 8631872-8636871 Brassica rapa FPsc
Brara.B01547 10.0kb upstream 10.0kb upstream 13185 true A02: 8618687-8631871 Brassica rapa FPsc
Brara.B01547 10.0kb upstream 10.0kb upstream 10000 false A02: 8618687-8628686 Brassica rapa FPsc
Brara.B01547 10.0kb downstream 10.0kb downstream 13185 true A02: 8628687-8641871 Brassica rapa FPsc
Brara.B01547 10.0kb downstream 10.0kb downstream 10000 false A02: 8631872-8641871 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367918 5261 Brassicaceae View MSA
123834383 5264 Brassicales-Malvales View MSA
124344312 5266 SBM View MSA
124238482 5268 Malvidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier