Gene : Brara.B01625 B. rapa FPsc v1.3
Defline:  (1 of 9) PTHR11685:SF154 - E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED Genomic Order:  1625
Name:  ? Brara.B01625 Secondary Identifier:  ? PAC:30610667
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01625 0.5kb upstream 0.5kb upstream 5427 true A02: 9176737-9182163 Brassica rapa FPsc
Brara.B01625 0.5kb upstream 0.5kb upstream 500 false A02: 9176737-9177236 Brassica rapa FPsc
Brara.B01625 0.5kb downstream 0.5kb downstream 5427 true A02: 9177237-9182663 Brassica rapa FPsc
Brara.B01625 0.5kb downstream 0.5kb downstream 500 false A02: 9182164-9182663 Brassica rapa FPsc
Brara.B01625 1.0kb upstream 1.0kb upstream 5927 true A02: 9176237-9182163 Brassica rapa FPsc
Brara.B01625 1.0kb upstream 1.0kb upstream 1000 false A02: 9176237-9177236 Brassica rapa FPsc
Brara.B01625 1.0kb downstream 1.0kb downstream 5927 true A02: 9177237-9183163 Brassica rapa FPsc
Brara.B01625 1.0kb downstream 1.0kb downstream 1000 false A02: 9182164-9183163 Brassica rapa FPsc
Brara.B01625 2.0kb upstream 2.0kb upstream 6927 true A02: 9175237-9182163 Brassica rapa FPsc
Brara.B01625 2.0kb upstream 2.0kb upstream 2000 false A02: 9175237-9177236 Brassica rapa FPsc
Brara.B01625 2.0kb downstream 2.0kb downstream 6927 true A02: 9177237-9184163 Brassica rapa FPsc
Brara.B01625 2.0kb downstream 2.0kb downstream 2000 false A02: 9182164-9184163 Brassica rapa FPsc
Brara.B01625 5.0kb upstream 5.0kb upstream 9927 true A02: 9172237-9182163 Brassica rapa FPsc
Brara.B01625 5.0kb upstream 5.0kb upstream 5000 false A02: 9172237-9177236 Brassica rapa FPsc
Brara.B01625 5.0kb downstream 5.0kb downstream 9927 true A02: 9177237-9187163 Brassica rapa FPsc
Brara.B01625 5.0kb downstream 5.0kb downstream 5000 false A02: 9182164-9187163 Brassica rapa FPsc
Brara.B01625 10.0kb upstream 10.0kb upstream 14927 true A02: 9167237-9182163 Brassica rapa FPsc
Brara.B01625 10.0kb upstream 10.0kb upstream 10000 false A02: 9167237-9177236 Brassica rapa FPsc
Brara.B01625 10.0kb downstream 10.0kb downstream 14927 true A02: 9177237-9192163 Brassica rapa FPsc
Brara.B01625 10.0kb downstream 10.0kb downstream 10000 false A02: 9182164-9192163 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365268 5261 Brassicaceae View MSA
123831076 5264 Brassicales-Malvales View MSA
124348050 5266 SBM View MSA
124248365 5268 Malvidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier