Gene : Brara.B01623 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR31642:SF40 - DUAL TRANSCRIPTION UNIT AND ALTERNATIVE SPLICING PROTEIN GLAUCE Genomic Order:  1623
Name:  ? Brara.B01623 Secondary Identifier:  ? PAC:30611031
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7120 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01623 0.5kb upstream 0.5kb upstream 3411 true A02: 9147245-9150655 Brassica rapa FPsc
Brara.B01623 0.5kb upstream 0.5kb upstream 500 false A02: 9150156-9150655 Brassica rapa FPsc
Brara.B01623 0.5kb downstream 0.5kb downstream 3411 true A02: 9146745-9150155 Brassica rapa FPsc
Brara.B01623 0.5kb downstream 0.5kb downstream 500 false A02: 9146745-9147244 Brassica rapa FPsc
Brara.B01623 1.0kb upstream 1.0kb upstream 3911 true A02: 9147245-9151155 Brassica rapa FPsc
Brara.B01623 1.0kb upstream 1.0kb upstream 1000 false A02: 9150156-9151155 Brassica rapa FPsc
Brara.B01623 1.0kb downstream 1.0kb downstream 3911 true A02: 9146245-9150155 Brassica rapa FPsc
Brara.B01623 1.0kb downstream 1.0kb downstream 1000 false A02: 9146245-9147244 Brassica rapa FPsc
Brara.B01623 2.0kb upstream 2.0kb upstream 4911 true A02: 9147245-9152155 Brassica rapa FPsc
Brara.B01623 2.0kb upstream 2.0kb upstream 2000 false A02: 9150156-9152155 Brassica rapa FPsc
Brara.B01623 2.0kb downstream 2.0kb downstream 4911 true A02: 9145245-9150155 Brassica rapa FPsc
Brara.B01623 2.0kb downstream 2.0kb downstream 2000 false A02: 9145245-9147244 Brassica rapa FPsc
Brara.B01623 5.0kb upstream 5.0kb upstream 7911 true A02: 9147245-9155155 Brassica rapa FPsc
Brara.B01623 5.0kb upstream 5.0kb upstream 5000 false A02: 9150156-9155155 Brassica rapa FPsc
Brara.B01623 5.0kb downstream 5.0kb downstream 7911 true A02: 9142245-9150155 Brassica rapa FPsc
Brara.B01623 5.0kb downstream 5.0kb downstream 5000 false A02: 9142245-9147244 Brassica rapa FPsc
Brara.B01623 10.0kb upstream 10.0kb upstream 12911 true A02: 9147245-9160155 Brassica rapa FPsc
Brara.B01623 10.0kb upstream 10.0kb upstream 10000 false A02: 9150156-9160155 Brassica rapa FPsc
Brara.B01623 10.0kb downstream 10.0kb downstream 12911 true A02: 9137245-9150155 Brassica rapa FPsc
Brara.B01623 10.0kb downstream 10.0kb downstream 10000 false A02: 9137245-9147244 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369907 5261 Brassicaceae View MSA
123827879 5264 Brassicales-Malvales View MSA
124345687 5266 SBM View MSA
124243245 5268 Malvidae View MSA
124063642 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier