Gene : Brara.B01415 B. rapa FPsc v1.3
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  1415
Name:  ? Brara.B01415 Secondary Identifier:  ? PAC:30608757
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TYRFUMCAT-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01415 0.5kb upstream 0.5kb upstream 2986 true A02: 7582874-7585859 Brassica rapa FPsc
Brara.B01415 0.5kb upstream 0.5kb upstream 500 false A02: 7582874-7583373 Brassica rapa FPsc
Brara.B01415 0.5kb downstream 0.5kb downstream 2986 true A02: 7583374-7586359 Brassica rapa FPsc
Brara.B01415 0.5kb downstream 0.5kb downstream 500 false A02: 7585860-7586359 Brassica rapa FPsc
Brara.B01415 1.0kb upstream 1.0kb upstream 3486 true A02: 7582374-7585859 Brassica rapa FPsc
Brara.B01415 1.0kb upstream 1.0kb upstream 1000 false A02: 7582374-7583373 Brassica rapa FPsc
Brara.B01415 1.0kb downstream 1.0kb downstream 3486 true A02: 7583374-7586859 Brassica rapa FPsc
Brara.B01415 1.0kb downstream 1.0kb downstream 1000 false A02: 7585860-7586859 Brassica rapa FPsc
Brara.B01415 2.0kb upstream 2.0kb upstream 4486 true A02: 7581374-7585859 Brassica rapa FPsc
Brara.B01415 2.0kb upstream 2.0kb upstream 2000 false A02: 7581374-7583373 Brassica rapa FPsc
Brara.B01415 2.0kb downstream 2.0kb downstream 4486 true A02: 7583374-7587859 Brassica rapa FPsc
Brara.B01415 2.0kb downstream 2.0kb downstream 2000 false A02: 7585860-7587859 Brassica rapa FPsc
Brara.B01415 5.0kb upstream 5.0kb upstream 7486 true A02: 7578374-7585859 Brassica rapa FPsc
Brara.B01415 5.0kb upstream 5.0kb upstream 5000 false A02: 7578374-7583373 Brassica rapa FPsc
Brara.B01415 5.0kb downstream 5.0kb downstream 7486 true A02: 7583374-7590859 Brassica rapa FPsc
Brara.B01415 5.0kb downstream 5.0kb downstream 5000 false A02: 7585860-7590859 Brassica rapa FPsc
Brara.B01415 10.0kb upstream 10.0kb upstream 12486 true A02: 7573374-7585859 Brassica rapa FPsc
Brara.B01415 10.0kb upstream 10.0kb upstream 10000 false A02: 7573374-7583373 Brassica rapa FPsc
Brara.B01415 10.0kb downstream 10.0kb downstream 12486 true A02: 7583374-7595859 Brassica rapa FPsc
Brara.B01415 10.0kb downstream 10.0kb downstream 10000 false A02: 7585860-7595859 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373163 5261 Brassicaceae View MSA
123829499 5264 Brassicales-Malvales View MSA
124338204 5266 SBM View MSA
124236984 5268 Malvidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier