Gene : Brara.H02238 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11387:SF15 - CYTOCHROME C OXIDASE SUBUNIT 6B-1 Genomic Order:  2238
Name:  ? Brara.H02238 Secondary Identifier:  ? PAC:30649978
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3781 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H02238 0.5kb upstream 0.5kb upstream 1682 true A08: 19495977-19497658 Brassica rapa FPsc
Brara.H02238 0.5kb upstream 0.5kb upstream 500 false A08: 19497159-19497658 Brassica rapa FPsc
Brara.H02238 0.5kb downstream 0.5kb downstream 1682 true A08: 19495477-19497158 Brassica rapa FPsc
Brara.H02238 0.5kb downstream 0.5kb downstream 500 false A08: 19495477-19495976 Brassica rapa FPsc
Brara.H02238 1.0kb upstream 1.0kb upstream 2182 true A08: 19495977-19498158 Brassica rapa FPsc
Brara.H02238 1.0kb upstream 1.0kb upstream 1000 false A08: 19497159-19498158 Brassica rapa FPsc
Brara.H02238 1.0kb downstream 1.0kb downstream 2182 true A08: 19494977-19497158 Brassica rapa FPsc
Brara.H02238 1.0kb downstream 1.0kb downstream 1000 false A08: 19494977-19495976 Brassica rapa FPsc
Brara.H02238 2.0kb upstream 2.0kb upstream 3182 true A08: 19495977-19499158 Brassica rapa FPsc
Brara.H02238 2.0kb upstream 2.0kb upstream 2000 false A08: 19497159-19499158 Brassica rapa FPsc
Brara.H02238 2.0kb downstream 2.0kb downstream 3182 true A08: 19493977-19497158 Brassica rapa FPsc
Brara.H02238 2.0kb downstream 2.0kb downstream 2000 false A08: 19493977-19495976 Brassica rapa FPsc
Brara.H02238 5.0kb upstream 5.0kb upstream 6182 true A08: 19495977-19502158 Brassica rapa FPsc
Brara.H02238 5.0kb upstream 5.0kb upstream 5000 false A08: 19497159-19502158 Brassica rapa FPsc
Brara.H02238 5.0kb downstream 5.0kb downstream 6182 true A08: 19490977-19497158 Brassica rapa FPsc
Brara.H02238 5.0kb downstream 5.0kb downstream 5000 false A08: 19490977-19495976 Brassica rapa FPsc
Brara.H02238 10.0kb upstream 10.0kb upstream 11182 true A08: 19495977-19507158 Brassica rapa FPsc
Brara.H02238 10.0kb upstream 10.0kb upstream 10000 false A08: 19497159-19507158 Brassica rapa FPsc
Brara.H02238 10.0kb downstream 10.0kb downstream 11182 true A08: 19485977-19497158 Brassica rapa FPsc
Brara.H02238 10.0kb downstream 10.0kb downstream 10000 false A08: 19485977-19495976 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122355680 5261 Brassicaceae Singleton cluster - no MSA
123793882 5264 Brassicales-Malvales Singleton cluster - no MSA
124291706 5266 SBM Singleton cluster - no MSA
124251643 5268 Malvidae View MSA
124072730 5270 Rosid View MSA
123743678 5271 Pentapetalae View MSA
122770737 5272 Eudicot View MSA
122050829 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier