Gene : Brara.B01473 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  1473
Name:  ? Brara.B01473 Secondary Identifier:  ? PAC:30609932
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ARGSPECAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc BSUBPOLYAMSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7528 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01473 0.5kb upstream 0.5kb upstream 3410 true A02: 8028019-8031428 Brassica rapa FPsc
Brara.B01473 0.5kb upstream 0.5kb upstream 500 false A02: 8030929-8031428 Brassica rapa FPsc
Brara.B01473 0.5kb downstream 0.5kb downstream 3410 true A02: 8027519-8030928 Brassica rapa FPsc
Brara.B01473 0.5kb downstream 0.5kb downstream 500 false A02: 8027519-8028018 Brassica rapa FPsc
Brara.B01473 1.0kb upstream 1.0kb upstream 3910 true A02: 8028019-8031928 Brassica rapa FPsc
Brara.B01473 1.0kb upstream 1.0kb upstream 1000 false A02: 8030929-8031928 Brassica rapa FPsc
Brara.B01473 1.0kb downstream 1.0kb downstream 3910 true A02: 8027019-8030928 Brassica rapa FPsc
Brara.B01473 1.0kb downstream 1.0kb downstream 1000 false A02: 8027019-8028018 Brassica rapa FPsc
Brara.B01473 2.0kb upstream 2.0kb upstream 4910 true A02: 8028019-8032928 Brassica rapa FPsc
Brara.B01473 2.0kb upstream 2.0kb upstream 2000 false A02: 8030929-8032928 Brassica rapa FPsc
Brara.B01473 2.0kb downstream 2.0kb downstream 4910 true A02: 8026019-8030928 Brassica rapa FPsc
Brara.B01473 2.0kb downstream 2.0kb downstream 2000 false A02: 8026019-8028018 Brassica rapa FPsc
Brara.B01473 5.0kb upstream 5.0kb upstream 7910 true A02: 8028019-8035928 Brassica rapa FPsc
Brara.B01473 5.0kb upstream 5.0kb upstream 5000 false A02: 8030929-8035928 Brassica rapa FPsc
Brara.B01473 5.0kb downstream 5.0kb downstream 7910 true A02: 8023019-8030928 Brassica rapa FPsc
Brara.B01473 5.0kb downstream 5.0kb downstream 5000 false A02: 8023019-8028018 Brassica rapa FPsc
Brara.B01473 10.0kb upstream 10.0kb upstream 12910 true A02: 8028019-8040928 Brassica rapa FPsc
Brara.B01473 10.0kb upstream 10.0kb upstream 10000 false A02: 8030929-8040928 Brassica rapa FPsc
Brara.B01473 10.0kb downstream 10.0kb downstream 12910 true A02: 8018019-8030928 Brassica rapa FPsc
Brara.B01473 10.0kb downstream 10.0kb downstream 10000 false A02: 8018019-8028018 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345457 5261 Brassicaceae Singleton cluster - no MSA
123785304 5264 Brassicales-Malvales Singleton cluster - no MSA
124283452 5266 SBM Singleton cluster - no MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier