Gene : Brara.I00489 B. rapa FPsc v1.3
Defline:  (1 of 4) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Genomic Order:  489
Name:  ? Brara.I00489 Secondary Identifier:  ? PAC:30643135
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00489 0.5kb upstream 0.5kb upstream 4679 true A09: 2768476-2773154 Brassica rapa FPsc
Brara.I00489 0.5kb upstream 0.5kb upstream 500 false A09: 2772655-2773154 Brassica rapa FPsc
Brara.I00489 0.5kb downstream 0.5kb downstream 4679 true A09: 2767976-2772654 Brassica rapa FPsc
Brara.I00489 0.5kb downstream 0.5kb downstream 500 false A09: 2767976-2768475 Brassica rapa FPsc
Brara.I00489 1.0kb upstream 1.0kb upstream 5179 true A09: 2768476-2773654 Brassica rapa FPsc
Brara.I00489 1.0kb upstream 1.0kb upstream 1000 false A09: 2772655-2773654 Brassica rapa FPsc
Brara.I00489 1.0kb downstream 1.0kb downstream 5179 true A09: 2767476-2772654 Brassica rapa FPsc
Brara.I00489 1.0kb downstream 1.0kb downstream 1000 false A09: 2767476-2768475 Brassica rapa FPsc
Brara.I00489 2.0kb upstream 2.0kb upstream 6179 true A09: 2768476-2774654 Brassica rapa FPsc
Brara.I00489 2.0kb upstream 2.0kb upstream 2000 false A09: 2772655-2774654 Brassica rapa FPsc
Brara.I00489 2.0kb downstream 2.0kb downstream 6179 true A09: 2766476-2772654 Brassica rapa FPsc
Brara.I00489 2.0kb downstream 2.0kb downstream 2000 false A09: 2766476-2768475 Brassica rapa FPsc
Brara.I00489 5.0kb upstream 5.0kb upstream 9179 true A09: 2768476-2777654 Brassica rapa FPsc
Brara.I00489 5.0kb upstream 5.0kb upstream 5000 false A09: 2772655-2777654 Brassica rapa FPsc
Brara.I00489 5.0kb downstream 5.0kb downstream 9179 true A09: 2763476-2772654 Brassica rapa FPsc
Brara.I00489 5.0kb downstream 5.0kb downstream 5000 false A09: 2763476-2768475 Brassica rapa FPsc
Brara.I00489 10.0kb upstream 10.0kb upstream 14179 true A09: 2768476-2782654 Brassica rapa FPsc
Brara.I00489 10.0kb upstream 10.0kb upstream 10000 false A09: 2772655-2782654 Brassica rapa FPsc
Brara.I00489 10.0kb downstream 10.0kb downstream 14179 true A09: 2758476-2772654 Brassica rapa FPsc
Brara.I00489 10.0kb downstream 10.0kb downstream 10000 false A09: 2758476-2768475 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360218 5261 Brassicaceae View MSA
123828544 5264 Brassicales-Malvales View MSA
124337472 5266 SBM View MSA
124249574 5268 Malvidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier