Gene : Brara.I00280 B. rapa FPsc v1.3
Defline:  (1 of 1) KOG3052 - Cytochrome c1 Genomic Order:  280
Name:  ? Brara.I00280 Secondary Identifier:  ? PAC:30641086
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3781 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00280 0.5kb upstream 0.5kb upstream 2330 true A09: 1533072-1535401 Brassica rapa FPsc
Brara.I00280 0.5kb upstream 0.5kb upstream 500 false A09: 1534902-1535401 Brassica rapa FPsc
Brara.I00280 0.5kb downstream 0.5kb downstream 2330 true A09: 1532572-1534901 Brassica rapa FPsc
Brara.I00280 0.5kb downstream 0.5kb downstream 500 false A09: 1532572-1533071 Brassica rapa FPsc
Brara.I00280 1.0kb upstream 1.0kb upstream 2830 true A09: 1533072-1535901 Brassica rapa FPsc
Brara.I00280 1.0kb upstream 1.0kb upstream 1000 false A09: 1534902-1535901 Brassica rapa FPsc
Brara.I00280 1.0kb downstream 1.0kb downstream 2830 true A09: 1532072-1534901 Brassica rapa FPsc
Brara.I00280 1.0kb downstream 1.0kb downstream 1000 false A09: 1532072-1533071 Brassica rapa FPsc
Brara.I00280 2.0kb upstream 2.0kb upstream 3830 true A09: 1533072-1536901 Brassica rapa FPsc
Brara.I00280 2.0kb upstream 2.0kb upstream 2000 false A09: 1534902-1536901 Brassica rapa FPsc
Brara.I00280 2.0kb downstream 2.0kb downstream 3830 true A09: 1531072-1534901 Brassica rapa FPsc
Brara.I00280 2.0kb downstream 2.0kb downstream 2000 false A09: 1531072-1533071 Brassica rapa FPsc
Brara.I00280 5.0kb upstream 5.0kb upstream 6830 true A09: 1533072-1539901 Brassica rapa FPsc
Brara.I00280 5.0kb upstream 5.0kb upstream 5000 false A09: 1534902-1539901 Brassica rapa FPsc
Brara.I00280 5.0kb downstream 5.0kb downstream 6830 true A09: 1528072-1534901 Brassica rapa FPsc
Brara.I00280 5.0kb downstream 5.0kb downstream 5000 false A09: 1528072-1533071 Brassica rapa FPsc
Brara.I00280 10.0kb upstream 10.0kb upstream 11830 true A09: 1533072-1544901 Brassica rapa FPsc
Brara.I00280 10.0kb upstream 10.0kb upstream 10000 false A09: 1534902-1544901 Brassica rapa FPsc
Brara.I00280 10.0kb downstream 10.0kb downstream 11830 true A09: 1523072-1534901 Brassica rapa FPsc
Brara.I00280 10.0kb downstream 10.0kb downstream 10000 false A09: 1523072-1533071 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122353332 5261 Brassicaceae Singleton cluster - no MSA
123791935 5264 Brassicales-Malvales Singleton cluster - no MSA
124289835 5266 SBM Singleton cluster - no MSA
124255748 5268 Malvidae View MSA
123953285 5270 Rosid View MSA
123754710 5271 Pentapetalae View MSA
122776057 5272 Eudicot View MSA
122048813 5273 Angiosperm View MSA
121344559 5274 Embryophyte View MSA
123427665 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier