Gene : Brara.I00338 B. rapa FPsc v1.3
Defline:  (1 of 5) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Genomic Order:  338
Name:  ? Brara.I00338 Secondary Identifier:  ? PAC:30644642
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3461 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3462 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3481 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00338 0.5kb upstream 0.5kb upstream 2496 true A09: 1874845-1877340 Brassica rapa FPsc
Brara.I00338 0.5kb upstream 0.5kb upstream 500 false A09: 1876841-1877340 Brassica rapa FPsc
Brara.I00338 0.5kb downstream 0.5kb downstream 2496 true A09: 1874345-1876840 Brassica rapa FPsc
Brara.I00338 0.5kb downstream 0.5kb downstream 500 false A09: 1874345-1874844 Brassica rapa FPsc
Brara.I00338 1.0kb upstream 1.0kb upstream 2996 true A09: 1874845-1877840 Brassica rapa FPsc
Brara.I00338 1.0kb upstream 1.0kb upstream 1000 false A09: 1876841-1877840 Brassica rapa FPsc
Brara.I00338 1.0kb downstream 1.0kb downstream 2996 true A09: 1873845-1876840 Brassica rapa FPsc
Brara.I00338 1.0kb downstream 1.0kb downstream 1000 false A09: 1873845-1874844 Brassica rapa FPsc
Brara.I00338 2.0kb upstream 2.0kb upstream 3996 true A09: 1874845-1878840 Brassica rapa FPsc
Brara.I00338 2.0kb upstream 2.0kb upstream 2000 false A09: 1876841-1878840 Brassica rapa FPsc
Brara.I00338 2.0kb downstream 2.0kb downstream 3996 true A09: 1872845-1876840 Brassica rapa FPsc
Brara.I00338 2.0kb downstream 2.0kb downstream 2000 false A09: 1872845-1874844 Brassica rapa FPsc
Brara.I00338 5.0kb upstream 5.0kb upstream 6996 true A09: 1874845-1881840 Brassica rapa FPsc
Brara.I00338 5.0kb upstream 5.0kb upstream 5000 false A09: 1876841-1881840 Brassica rapa FPsc
Brara.I00338 5.0kb downstream 5.0kb downstream 6996 true A09: 1869845-1876840 Brassica rapa FPsc
Brara.I00338 5.0kb downstream 5.0kb downstream 5000 false A09: 1869845-1874844 Brassica rapa FPsc
Brara.I00338 10.0kb upstream 10.0kb upstream 11996 true A09: 1874845-1886840 Brassica rapa FPsc
Brara.I00338 10.0kb upstream 10.0kb upstream 10000 false A09: 1876841-1886840 Brassica rapa FPsc
Brara.I00338 10.0kb downstream 10.0kb downstream 11996 true A09: 1864845-1876840 Brassica rapa FPsc
Brara.I00338 10.0kb downstream 10.0kb downstream 10000 false A09: 1864845-1874844 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122354199 5261 Brassicaceae Singleton cluster - no MSA
123792630 5264 Brassicales-Malvales Singleton cluster - no MSA
124290499 5266 SBM Singleton cluster - no MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier