Gene : Brara.E00563 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR12526:SF315 - GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE Genomic Order:  563
Name:  ? Brara.E00563 Secondary Identifier:  ? PAC:30626782
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E00563 0.5kb upstream 0.5kb upstream 3324 true A05: 3103548-3106871 Brassica rapa FPsc
Brara.E00563 0.5kb upstream 0.5kb upstream 500 false A05: 3106372-3106871 Brassica rapa FPsc
Brara.E00563 0.5kb downstream 0.5kb downstream 3324 true A05: 3103048-3106371 Brassica rapa FPsc
Brara.E00563 0.5kb downstream 0.5kb downstream 500 false A05: 3103048-3103547 Brassica rapa FPsc
Brara.E00563 1.0kb upstream 1.0kb upstream 3824 true A05: 3103548-3107371 Brassica rapa FPsc
Brara.E00563 1.0kb upstream 1.0kb upstream 1000 false A05: 3106372-3107371 Brassica rapa FPsc
Brara.E00563 1.0kb downstream 1.0kb downstream 3824 true A05: 3102548-3106371 Brassica rapa FPsc
Brara.E00563 1.0kb downstream 1.0kb downstream 1000 false A05: 3102548-3103547 Brassica rapa FPsc
Brara.E00563 2.0kb upstream 2.0kb upstream 4824 true A05: 3103548-3108371 Brassica rapa FPsc
Brara.E00563 2.0kb upstream 2.0kb upstream 2000 false A05: 3106372-3108371 Brassica rapa FPsc
Brara.E00563 2.0kb downstream 2.0kb downstream 4824 true A05: 3101548-3106371 Brassica rapa FPsc
Brara.E00563 2.0kb downstream 2.0kb downstream 2000 false A05: 3101548-3103547 Brassica rapa FPsc
Brara.E00563 5.0kb upstream 5.0kb upstream 7824 true A05: 3103548-3111371 Brassica rapa FPsc
Brara.E00563 5.0kb upstream 5.0kb upstream 5000 false A05: 3106372-3111371 Brassica rapa FPsc
Brara.E00563 5.0kb downstream 5.0kb downstream 7824 true A05: 3098548-3106371 Brassica rapa FPsc
Brara.E00563 5.0kb downstream 5.0kb downstream 5000 false A05: 3098548-3103547 Brassica rapa FPsc
Brara.E00563 10.0kb upstream 10.0kb upstream 12824 true A05: 3103548-3116371 Brassica rapa FPsc
Brara.E00563 10.0kb upstream 10.0kb upstream 10000 false A05: 3106372-3116371 Brassica rapa FPsc
Brara.E00563 10.0kb downstream 10.0kb downstream 12824 true A05: 3093548-3106371 Brassica rapa FPsc
Brara.E00563 10.0kb downstream 10.0kb downstream 10000 false A05: 3093548-3103547 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377953 5261 Brassicaceae View MSA
123836966 5264 Brassicales-Malvales View MSA
124346935 5266 SBM View MSA
124245452 5268 Malvidae View MSA
124069266 5270 Rosid View MSA
123741917 5271 Pentapetalae View MSA
122794409 5272 Eudicot View MSA
122048989 5273 Angiosperm View MSA
121348193 5274 Embryophyte View MSA
123425539 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier