Gene : Brara.E00472 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  472
Name:  ? Brara.E00472 Secondary Identifier:  ? PAC:30627370
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E00472 0.5kb upstream 0.5kb upstream 5496 true A05: 2540903-2546398 Brassica rapa FPsc
Brara.E00472 0.5kb upstream 0.5kb upstream 500 false A05: 2545899-2546398 Brassica rapa FPsc
Brara.E00472 0.5kb downstream 0.5kb downstream 5496 true A05: 2540403-2545898 Brassica rapa FPsc
Brara.E00472 0.5kb downstream 0.5kb downstream 500 false A05: 2540403-2540902 Brassica rapa FPsc
Brara.E00472 1.0kb upstream 1.0kb upstream 5996 true A05: 2540903-2546898 Brassica rapa FPsc
Brara.E00472 1.0kb upstream 1.0kb upstream 1000 false A05: 2545899-2546898 Brassica rapa FPsc
Brara.E00472 1.0kb downstream 1.0kb downstream 5996 true A05: 2539903-2545898 Brassica rapa FPsc
Brara.E00472 1.0kb downstream 1.0kb downstream 1000 false A05: 2539903-2540902 Brassica rapa FPsc
Brara.E00472 2.0kb upstream 2.0kb upstream 6996 true A05: 2540903-2547898 Brassica rapa FPsc
Brara.E00472 2.0kb upstream 2.0kb upstream 2000 false A05: 2545899-2547898 Brassica rapa FPsc
Brara.E00472 2.0kb downstream 2.0kb downstream 6996 true A05: 2538903-2545898 Brassica rapa FPsc
Brara.E00472 2.0kb downstream 2.0kb downstream 2000 false A05: 2538903-2540902 Brassica rapa FPsc
Brara.E00472 5.0kb upstream 5.0kb upstream 9996 true A05: 2540903-2550898 Brassica rapa FPsc
Brara.E00472 5.0kb upstream 5.0kb upstream 5000 false A05: 2545899-2550898 Brassica rapa FPsc
Brara.E00472 5.0kb downstream 5.0kb downstream 9996 true A05: 2535903-2545898 Brassica rapa FPsc
Brara.E00472 5.0kb downstream 5.0kb downstream 5000 false A05: 2535903-2540902 Brassica rapa FPsc
Brara.E00472 10.0kb upstream 10.0kb upstream 14996 true A05: 2540903-2555898 Brassica rapa FPsc
Brara.E00472 10.0kb upstream 10.0kb upstream 10000 false A05: 2545899-2555898 Brassica rapa FPsc
Brara.E00472 10.0kb downstream 10.0kb downstream 14996 true A05: 2530903-2545898 Brassica rapa FPsc
Brara.E00472 10.0kb downstream 10.0kb downstream 10000 false A05: 2530903-2540902 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364133 5261 Brassicaceae View MSA
123841035 5264 Brassicales-Malvales View MSA
124344060 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier