Gene : Brara.B01981 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.6.1.9 - Histidinol-phosphate transaminase / Imidazolylacetolphosphate aminotransferase Genomic Order:  1981
Name:  ? Brara.B01981 Secondary Identifier:  ? PAC:30607968
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc HISTSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01981 0.5kb upstream 0.5kb upstream 2771 true A02: 12226797-12229567 Brassica rapa FPsc
Brara.B01981 0.5kb upstream 0.5kb upstream 500 false A02: 12226797-12227296 Brassica rapa FPsc
Brara.B01981 0.5kb downstream 0.5kb downstream 2771 true A02: 12227297-12230067 Brassica rapa FPsc
Brara.B01981 0.5kb downstream 0.5kb downstream 500 false A02: 12229568-12230067 Brassica rapa FPsc
Brara.B01981 1.0kb upstream 1.0kb upstream 3271 true A02: 12226297-12229567 Brassica rapa FPsc
Brara.B01981 1.0kb upstream 1.0kb upstream 1000 false A02: 12226297-12227296 Brassica rapa FPsc
Brara.B01981 1.0kb downstream 1.0kb downstream 3271 true A02: 12227297-12230567 Brassica rapa FPsc
Brara.B01981 1.0kb downstream 1.0kb downstream 1000 false A02: 12229568-12230567 Brassica rapa FPsc
Brara.B01981 2.0kb upstream 2.0kb upstream 4271 true A02: 12225297-12229567 Brassica rapa FPsc
Brara.B01981 2.0kb upstream 2.0kb upstream 2000 false A02: 12225297-12227296 Brassica rapa FPsc
Brara.B01981 2.0kb downstream 2.0kb downstream 4271 true A02: 12227297-12231567 Brassica rapa FPsc
Brara.B01981 2.0kb downstream 2.0kb downstream 2000 false A02: 12229568-12231567 Brassica rapa FPsc
Brara.B01981 5.0kb upstream 5.0kb upstream 7271 true A02: 12222297-12229567 Brassica rapa FPsc
Brara.B01981 5.0kb upstream 5.0kb upstream 5000 false A02: 12222297-12227296 Brassica rapa FPsc
Brara.B01981 5.0kb downstream 5.0kb downstream 7271 true A02: 12227297-12234567 Brassica rapa FPsc
Brara.B01981 5.0kb downstream 5.0kb downstream 5000 false A02: 12229568-12234567 Brassica rapa FPsc
Brara.B01981 10.0kb upstream 10.0kb upstream 12271 true A02: 12217297-12229567 Brassica rapa FPsc
Brara.B01981 10.0kb upstream 10.0kb upstream 10000 false A02: 12217297-12227296 Brassica rapa FPsc
Brara.B01981 10.0kb downstream 10.0kb downstream 12271 true A02: 12227297-12239567 Brassica rapa FPsc
Brara.B01981 10.0kb downstream 10.0kb downstream 10000 false A02: 12229568-12239567 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344833 5261 Brassicaceae Singleton cluster - no MSA
123784775 5264 Brassicales-Malvales Singleton cluster - no MSA
124282938 5266 SBM Singleton cluster - no MSA
124251034 5268 Malvidae View MSA
124062361 5270 Rosid View MSA
123738410 5271 Pentapetalae View MSA
122789923 5272 Eudicot View MSA
122043706 5273 Angiosperm View MSA
121344225 5274 Embryophyte View MSA
123423969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier