Gene : Brara.B02031 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  2031
Name:  ? Brara.B02031 Secondary Identifier:  ? PAC:30610529
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5409 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5410 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-735 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B02031 0.5kb upstream 0.5kb upstream 4369 true A02: 12607033-12611401 Brassica rapa FPsc
Brara.B02031 0.5kb upstream 0.5kb upstream 500 false A02: 12607033-12607532 Brassica rapa FPsc
Brara.B02031 0.5kb downstream 0.5kb downstream 4369 true A02: 12607533-12611901 Brassica rapa FPsc
Brara.B02031 0.5kb downstream 0.5kb downstream 500 false A02: 12611402-12611901 Brassica rapa FPsc
Brara.B02031 1.0kb upstream 1.0kb upstream 4869 true A02: 12606533-12611401 Brassica rapa FPsc
Brara.B02031 1.0kb upstream 1.0kb upstream 1000 false A02: 12606533-12607532 Brassica rapa FPsc
Brara.B02031 1.0kb downstream 1.0kb downstream 4869 true A02: 12607533-12612401 Brassica rapa FPsc
Brara.B02031 1.0kb downstream 1.0kb downstream 1000 false A02: 12611402-12612401 Brassica rapa FPsc
Brara.B02031 2.0kb upstream 2.0kb upstream 5869 true A02: 12605533-12611401 Brassica rapa FPsc
Brara.B02031 2.0kb upstream 2.0kb upstream 2000 false A02: 12605533-12607532 Brassica rapa FPsc
Brara.B02031 2.0kb downstream 2.0kb downstream 5869 true A02: 12607533-12613401 Brassica rapa FPsc
Brara.B02031 2.0kb downstream 2.0kb downstream 2000 false A02: 12611402-12613401 Brassica rapa FPsc
Brara.B02031 5.0kb upstream 5.0kb upstream 8869 true A02: 12602533-12611401 Brassica rapa FPsc
Brara.B02031 5.0kb upstream 5.0kb upstream 5000 false A02: 12602533-12607532 Brassica rapa FPsc
Brara.B02031 5.0kb downstream 5.0kb downstream 8869 true A02: 12607533-12616401 Brassica rapa FPsc
Brara.B02031 5.0kb downstream 5.0kb downstream 5000 false A02: 12611402-12616401 Brassica rapa FPsc
Brara.B02031 10.0kb upstream 10.0kb upstream 13869 true A02: 12597533-12611401 Brassica rapa FPsc
Brara.B02031 10.0kb upstream 10.0kb upstream 10000 false A02: 12597533-12607532 Brassica rapa FPsc
Brara.B02031 10.0kb downstream 10.0kb downstream 13869 true A02: 12607533-12621401 Brassica rapa FPsc
Brara.B02031 10.0kb downstream 10.0kb downstream 10000 false A02: 12611402-12621401 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371456 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier