Gene : Brara.I01561 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  1561
Name:  ? Brara.I01561 Secondary Identifier:  ? PAC:30642524
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01561 0.5kb upstream 0.5kb upstream 3248 true A09: 10206899-10210146 Brassica rapa FPsc
Brara.I01561 0.5kb upstream 0.5kb upstream 500 false A09: 10206899-10207398 Brassica rapa FPsc
Brara.I01561 0.5kb downstream 0.5kb downstream 3248 true A09: 10207399-10210646 Brassica rapa FPsc
Brara.I01561 0.5kb downstream 0.5kb downstream 500 false A09: 10210147-10210646 Brassica rapa FPsc
Brara.I01561 1.0kb upstream 1.0kb upstream 3748 true A09: 10206399-10210146 Brassica rapa FPsc
Brara.I01561 1.0kb upstream 1.0kb upstream 1000 false A09: 10206399-10207398 Brassica rapa FPsc
Brara.I01561 1.0kb downstream 1.0kb downstream 3748 true A09: 10207399-10211146 Brassica rapa FPsc
Brara.I01561 1.0kb downstream 1.0kb downstream 1000 false A09: 10210147-10211146 Brassica rapa FPsc
Brara.I01561 2.0kb upstream 2.0kb upstream 4748 true A09: 10205399-10210146 Brassica rapa FPsc
Brara.I01561 2.0kb upstream 2.0kb upstream 2000 false A09: 10205399-10207398 Brassica rapa FPsc
Brara.I01561 2.0kb downstream 2.0kb downstream 4748 true A09: 10207399-10212146 Brassica rapa FPsc
Brara.I01561 2.0kb downstream 2.0kb downstream 2000 false A09: 10210147-10212146 Brassica rapa FPsc
Brara.I01561 5.0kb upstream 5.0kb upstream 7748 true A09: 10202399-10210146 Brassica rapa FPsc
Brara.I01561 5.0kb upstream 5.0kb upstream 5000 false A09: 10202399-10207398 Brassica rapa FPsc
Brara.I01561 5.0kb downstream 5.0kb downstream 7748 true A09: 10207399-10215146 Brassica rapa FPsc
Brara.I01561 5.0kb downstream 5.0kb downstream 5000 false A09: 10210147-10215146 Brassica rapa FPsc
Brara.I01561 10.0kb upstream 10.0kb upstream 12748 true A09: 10197399-10210146 Brassica rapa FPsc
Brara.I01561 10.0kb upstream 10.0kb upstream 10000 false A09: 10197399-10207398 Brassica rapa FPsc
Brara.I01561 10.0kb downstream 10.0kb downstream 12748 true A09: 10207399-10220146 Brassica rapa FPsc
Brara.I01561 10.0kb downstream 10.0kb downstream 10000 false A09: 10210147-10220146 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371639 5261 Brassicaceae View MSA
123839498 5264 Brassicales-Malvales View MSA
124342145 5266 SBM View MSA
124241872 5268 Malvidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier