Gene : Brara.I01070 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR10314:SF123 - TRYPTOPHAN SYNTHASE BETA CHAIN-LIKE PROTEIN Genomic Order:  1070
Name:  ? Brara.I01070 Secondary Identifier:  ? PAC:30645889
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRPSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01070 0.5kb upstream 0.5kb upstream 11544 true A09: 6139858-6151401 Brassica rapa FPsc
Brara.I01070 0.5kb upstream 0.5kb upstream 500 false A09: 6139858-6140357 Brassica rapa FPsc
Brara.I01070 0.5kb downstream 0.5kb downstream 11544 true A09: 6140358-6151901 Brassica rapa FPsc
Brara.I01070 0.5kb downstream 0.5kb downstream 500 false A09: 6151402-6151901 Brassica rapa FPsc
Brara.I01070 1.0kb upstream 1.0kb upstream 12044 true A09: 6139358-6151401 Brassica rapa FPsc
Brara.I01070 1.0kb upstream 1.0kb upstream 1000 false A09: 6139358-6140357 Brassica rapa FPsc
Brara.I01070 1.0kb downstream 1.0kb downstream 12044 true A09: 6140358-6152401 Brassica rapa FPsc
Brara.I01070 1.0kb downstream 1.0kb downstream 1000 false A09: 6151402-6152401 Brassica rapa FPsc
Brara.I01070 2.0kb upstream 2.0kb upstream 13044 true A09: 6138358-6151401 Brassica rapa FPsc
Brara.I01070 2.0kb upstream 2.0kb upstream 2000 false A09: 6138358-6140357 Brassica rapa FPsc
Brara.I01070 2.0kb downstream 2.0kb downstream 13044 true A09: 6140358-6153401 Brassica rapa FPsc
Brara.I01070 2.0kb downstream 2.0kb downstream 2000 false A09: 6151402-6153401 Brassica rapa FPsc
Brara.I01070 5.0kb upstream 5.0kb upstream 16044 true A09: 6135358-6151401 Brassica rapa FPsc
Brara.I01070 5.0kb upstream 5.0kb upstream 5000 false A09: 6135358-6140357 Brassica rapa FPsc
Brara.I01070 5.0kb downstream 5.0kb downstream 16044 true A09: 6140358-6156401 Brassica rapa FPsc
Brara.I01070 5.0kb downstream 5.0kb downstream 5000 false A09: 6151402-6156401 Brassica rapa FPsc
Brara.I01070 10.0kb upstream 10.0kb upstream 21044 true A09: 6130358-6151401 Brassica rapa FPsc
Brara.I01070 10.0kb upstream 10.0kb upstream 10000 false A09: 6130358-6140357 Brassica rapa FPsc
Brara.I01070 10.0kb downstream 10.0kb downstream 21044 true A09: 6140358-6161401 Brassica rapa FPsc
Brara.I01070 10.0kb downstream 10.0kb downstream 10000 false A09: 6151402-6161401 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364301 5261 Brassicaceae View MSA
123832912 5264 Brassicales-Malvales View MSA
124344343 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier