Gene : Brara.B02376 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11406:SF9 - PHOSPHOGLYCERATE KINASE Genomic Order:  2376
Name:  ? Brara.B02376 Secondary Identifier:  ? PAC:30607659
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc CALVIN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc SUCSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B02376 0.5kb upstream 0.5kb upstream 12578 true A02: 15567526-15580103 Brassica rapa FPsc
Brara.B02376 0.5kb upstream 0.5kb upstream 500 false A02: 15579604-15580103 Brassica rapa FPsc
Brara.B02376 0.5kb downstream 0.5kb downstream 12578 true A02: 15567026-15579603 Brassica rapa FPsc
Brara.B02376 0.5kb downstream 0.5kb downstream 500 false A02: 15567026-15567525 Brassica rapa FPsc
Brara.B02376 1.0kb upstream 1.0kb upstream 13078 true A02: 15567526-15580603 Brassica rapa FPsc
Brara.B02376 1.0kb upstream 1.0kb upstream 1000 false A02: 15579604-15580603 Brassica rapa FPsc
Brara.B02376 1.0kb downstream 1.0kb downstream 13078 true A02: 15566526-15579603 Brassica rapa FPsc
Brara.B02376 1.0kb downstream 1.0kb downstream 1000 false A02: 15566526-15567525 Brassica rapa FPsc
Brara.B02376 2.0kb upstream 2.0kb upstream 14078 true A02: 15567526-15581603 Brassica rapa FPsc
Brara.B02376 2.0kb upstream 2.0kb upstream 2000 false A02: 15579604-15581603 Brassica rapa FPsc
Brara.B02376 2.0kb downstream 2.0kb downstream 14078 true A02: 15565526-15579603 Brassica rapa FPsc
Brara.B02376 2.0kb downstream 2.0kb downstream 2000 false A02: 15565526-15567525 Brassica rapa FPsc
Brara.B02376 5.0kb upstream 5.0kb upstream 17078 true A02: 15567526-15584603 Brassica rapa FPsc
Brara.B02376 5.0kb upstream 5.0kb upstream 5000 false A02: 15579604-15584603 Brassica rapa FPsc
Brara.B02376 5.0kb downstream 5.0kb downstream 17078 true A02: 15562526-15579603 Brassica rapa FPsc
Brara.B02376 5.0kb downstream 5.0kb downstream 5000 false A02: 15562526-15567525 Brassica rapa FPsc
Brara.B02376 10.0kb upstream 10.0kb upstream 22078 true A02: 15567526-15589603 Brassica rapa FPsc
Brara.B02376 10.0kb upstream 10.0kb upstream 10000 false A02: 15579604-15589603 Brassica rapa FPsc
Brara.B02376 10.0kb downstream 10.0kb downstream 22078 true A02: 15557526-15579603 Brassica rapa FPsc
Brara.B02376 10.0kb downstream 10.0kb downstream 10000 false A02: 15557526-15567525 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121503256 5273 Angiosperm Singleton cluster - no MSA
122344726 5261 Brassicaceae Singleton cluster - no MSA
123784684 5264 Brassicales-Malvales Singleton cluster - no MSA
124282850 5266 SBM Singleton cluster - no MSA
124137364 5268 Malvidae Singleton cluster - no MSA
123865085 5270 Rosid Singleton cluster - no MSA
123450317 5271 Pentapetalae Singleton cluster - no MSA
122485841 5272 Eudicot Singleton cluster - no MSA
120776548 5274 Embryophyte Singleton cluster - no MSA
122818816 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

1 Strain

DB identifier