Gene : Brara.I00892 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR10830 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT Genomic Order:  892
Name:  ? Brara.I00892 Secondary Identifier:  ? PAC:30646467
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00892 0.5kb upstream 0.5kb upstream 3429 true A09: 4983191-4986619 Brassica rapa FPsc
Brara.I00892 0.5kb upstream 0.5kb upstream 500 false A09: 4983191-4983690 Brassica rapa FPsc
Brara.I00892 0.5kb downstream 0.5kb downstream 3429 true A09: 4983691-4987119 Brassica rapa FPsc
Brara.I00892 0.5kb downstream 0.5kb downstream 500 false A09: 4986620-4987119 Brassica rapa FPsc
Brara.I00892 1.0kb upstream 1.0kb upstream 3929 true A09: 4982691-4986619 Brassica rapa FPsc
Brara.I00892 1.0kb upstream 1.0kb upstream 1000 false A09: 4982691-4983690 Brassica rapa FPsc
Brara.I00892 1.0kb downstream 1.0kb downstream 3929 true A09: 4983691-4987619 Brassica rapa FPsc
Brara.I00892 1.0kb downstream 1.0kb downstream 1000 false A09: 4986620-4987619 Brassica rapa FPsc
Brara.I00892 2.0kb upstream 2.0kb upstream 4929 true A09: 4981691-4986619 Brassica rapa FPsc
Brara.I00892 2.0kb upstream 2.0kb upstream 2000 false A09: 4981691-4983690 Brassica rapa FPsc
Brara.I00892 2.0kb downstream 2.0kb downstream 4929 true A09: 4983691-4988619 Brassica rapa FPsc
Brara.I00892 2.0kb downstream 2.0kb downstream 2000 false A09: 4986620-4988619 Brassica rapa FPsc
Brara.I00892 5.0kb upstream 5.0kb upstream 7929 true A09: 4978691-4986619 Brassica rapa FPsc
Brara.I00892 5.0kb upstream 5.0kb upstream 5000 false A09: 4978691-4983690 Brassica rapa FPsc
Brara.I00892 5.0kb downstream 5.0kb downstream 7929 true A09: 4983691-4991619 Brassica rapa FPsc
Brara.I00892 5.0kb downstream 5.0kb downstream 5000 false A09: 4986620-4991619 Brassica rapa FPsc
Brara.I00892 10.0kb upstream 10.0kb upstream 12929 true A09: 4973691-4986619 Brassica rapa FPsc
Brara.I00892 10.0kb upstream 10.0kb upstream 10000 false A09: 4973691-4983690 Brassica rapa FPsc
Brara.I00892 10.0kb downstream 10.0kb downstream 12929 true A09: 4983691-4996619 Brassica rapa FPsc
Brara.I00892 10.0kb downstream 10.0kb downstream 10000 false A09: 4986620-4996619 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354656 5261 Brassicaceae Singleton cluster - no MSA
123840413 5264 Brassicales-Malvales View MSA
124344226 5266 SBM View MSA
124247082 5268 Malvidae View MSA
124068275 5270 Rosid View MSA
123750728 5271 Pentapetalae View MSA
122793398 5272 Eudicot View MSA
122043093 5273 Angiosperm View MSA
121346216 5274 Embryophyte View MSA
123424757 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier