Gene : Brara.B03235 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13370 - RNA METHYLASE-RELATED Genomic Order:  3235
Name:  ? Brara.B03235 Secondary Identifier:  ? PAC:30609379
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6829 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B03235 0.5kb upstream 0.5kb upstream 2653 true A02: 27172824-27175476 Brassica rapa FPsc
Brara.B03235 0.5kb upstream 0.5kb upstream 500 false A02: 27174977-27175476 Brassica rapa FPsc
Brara.B03235 0.5kb downstream 0.5kb downstream 2653 true A02: 27172324-27174976 Brassica rapa FPsc
Brara.B03235 0.5kb downstream 0.5kb downstream 500 false A02: 27172324-27172823 Brassica rapa FPsc
Brara.B03235 1.0kb upstream 1.0kb upstream 3153 true A02: 27172824-27175976 Brassica rapa FPsc
Brara.B03235 1.0kb upstream 1.0kb upstream 1000 false A02: 27174977-27175976 Brassica rapa FPsc
Brara.B03235 1.0kb downstream 1.0kb downstream 3153 true A02: 27171824-27174976 Brassica rapa FPsc
Brara.B03235 1.0kb downstream 1.0kb downstream 1000 false A02: 27171824-27172823 Brassica rapa FPsc
Brara.B03235 2.0kb upstream 2.0kb upstream 4153 true A02: 27172824-27176976 Brassica rapa FPsc
Brara.B03235 2.0kb upstream 2.0kb upstream 2000 false A02: 27174977-27176976 Brassica rapa FPsc
Brara.B03235 2.0kb downstream 2.0kb downstream 4153 true A02: 27170824-27174976 Brassica rapa FPsc
Brara.B03235 2.0kb downstream 2.0kb downstream 2000 false A02: 27170824-27172823 Brassica rapa FPsc
Brara.B03235 5.0kb upstream 5.0kb upstream 7153 true A02: 27172824-27179976 Brassica rapa FPsc
Brara.B03235 5.0kb upstream 5.0kb upstream 5000 false A02: 27174977-27179976 Brassica rapa FPsc
Brara.B03235 5.0kb downstream 5.0kb downstream 7153 true A02: 27167824-27174976 Brassica rapa FPsc
Brara.B03235 5.0kb downstream 5.0kb downstream 5000 false A02: 27167824-27172823 Brassica rapa FPsc
Brara.B03235 10.0kb upstream 10.0kb upstream 12153 true A02: 27172824-27184976 Brassica rapa FPsc
Brara.B03235 10.0kb upstream 10.0kb upstream 10000 false A02: 27174977-27184976 Brassica rapa FPsc
Brara.B03235 10.0kb downstream 10.0kb downstream 12153 true A02: 27162824-27174976 Brassica rapa FPsc
Brara.B03235 10.0kb downstream 10.0kb downstream 10000 false A02: 27162824-27172823 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345272 5261 Brassicaceae Singleton cluster - no MSA
123842562 5264 Brassicales-Malvales View MSA
124323597 5266 SBM View MSA
124252860 5268 Malvidae View MSA
124065317 5270 Rosid View MSA
123738561 5271 Pentapetalae View MSA
122788498 5272 Eudicot View MSA
122048014 5273 Angiosperm View MSA
121347099 5274 Embryophyte View MSA
123424311 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier