Gene : Brara.I02842 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  2842
Name:  ? Brara.I02842 Secondary Identifier:  ? PAC:30640861
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5173 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PYRUVDEHYD-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I02842 0.5kb upstream 0.5kb upstream 2928 true A09: 27424805-27427732 Brassica rapa FPsc
Brara.I02842 0.5kb upstream 0.5kb upstream 500 false A09: 27424805-27425304 Brassica rapa FPsc
Brara.I02842 0.5kb downstream 0.5kb downstream 2928 true A09: 27425305-27428232 Brassica rapa FPsc
Brara.I02842 0.5kb downstream 0.5kb downstream 500 false A09: 27427733-27428232 Brassica rapa FPsc
Brara.I02842 1.0kb upstream 1.0kb upstream 3428 true A09: 27424305-27427732 Brassica rapa FPsc
Brara.I02842 1.0kb upstream 1.0kb upstream 1000 false A09: 27424305-27425304 Brassica rapa FPsc
Brara.I02842 1.0kb downstream 1.0kb downstream 3428 true A09: 27425305-27428732 Brassica rapa FPsc
Brara.I02842 1.0kb downstream 1.0kb downstream 1000 false A09: 27427733-27428732 Brassica rapa FPsc
Brara.I02842 2.0kb upstream 2.0kb upstream 4428 true A09: 27423305-27427732 Brassica rapa FPsc
Brara.I02842 2.0kb upstream 2.0kb upstream 2000 false A09: 27423305-27425304 Brassica rapa FPsc
Brara.I02842 2.0kb downstream 2.0kb downstream 4428 true A09: 27425305-27429732 Brassica rapa FPsc
Brara.I02842 2.0kb downstream 2.0kb downstream 2000 false A09: 27427733-27429732 Brassica rapa FPsc
Brara.I02842 5.0kb upstream 5.0kb upstream 7428 true A09: 27420305-27427732 Brassica rapa FPsc
Brara.I02842 5.0kb upstream 5.0kb upstream 5000 false A09: 27420305-27425304 Brassica rapa FPsc
Brara.I02842 5.0kb downstream 5.0kb downstream 7428 true A09: 27425305-27432732 Brassica rapa FPsc
Brara.I02842 5.0kb downstream 5.0kb downstream 5000 false A09: 27427733-27432732 Brassica rapa FPsc
Brara.I02842 10.0kb upstream 10.0kb upstream 12428 true A09: 27415305-27427732 Brassica rapa FPsc
Brara.I02842 10.0kb upstream 10.0kb upstream 10000 false A09: 27415305-27425304 Brassica rapa FPsc
Brara.I02842 10.0kb downstream 10.0kb downstream 12428 true A09: 27425305-27437732 Brassica rapa FPsc
Brara.I02842 10.0kb downstream 10.0kb downstream 10000 false A09: 27427733-27437732 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365093 5261 Brassicaceae View MSA
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier