Gene : Brara.E01162 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  1162
Name:  ? Brara.E01162 Secondary Identifier:  ? PAC:30626080
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7204 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E01162 0.5kb upstream 0.5kb upstream 2227 true A05: 6937402-6939628 Brassica rapa FPsc
Brara.E01162 0.5kb upstream 0.5kb upstream 500 false A05: 6939129-6939628 Brassica rapa FPsc
Brara.E01162 0.5kb downstream 0.5kb downstream 2227 true A05: 6936902-6939128 Brassica rapa FPsc
Brara.E01162 0.5kb downstream 0.5kb downstream 500 false A05: 6936902-6937401 Brassica rapa FPsc
Brara.E01162 1.0kb upstream 1.0kb upstream 2727 true A05: 6937402-6940128 Brassica rapa FPsc
Brara.E01162 1.0kb upstream 1.0kb upstream 1000 false A05: 6939129-6940128 Brassica rapa FPsc
Brara.E01162 1.0kb downstream 1.0kb downstream 2727 true A05: 6936402-6939128 Brassica rapa FPsc
Brara.E01162 1.0kb downstream 1.0kb downstream 1000 false A05: 6936402-6937401 Brassica rapa FPsc
Brara.E01162 2.0kb upstream 2.0kb upstream 3727 true A05: 6937402-6941128 Brassica rapa FPsc
Brara.E01162 2.0kb upstream 2.0kb upstream 2000 false A05: 6939129-6941128 Brassica rapa FPsc
Brara.E01162 2.0kb downstream 2.0kb downstream 3727 true A05: 6935402-6939128 Brassica rapa FPsc
Brara.E01162 2.0kb downstream 2.0kb downstream 2000 false A05: 6935402-6937401 Brassica rapa FPsc
Brara.E01162 5.0kb upstream 5.0kb upstream 6727 true A05: 6937402-6944128 Brassica rapa FPsc
Brara.E01162 5.0kb upstream 5.0kb upstream 5000 false A05: 6939129-6944128 Brassica rapa FPsc
Brara.E01162 5.0kb downstream 5.0kb downstream 6727 true A05: 6932402-6939128 Brassica rapa FPsc
Brara.E01162 5.0kb downstream 5.0kb downstream 5000 false A05: 6932402-6937401 Brassica rapa FPsc
Brara.E01162 10.0kb upstream 10.0kb upstream 11727 true A05: 6937402-6949128 Brassica rapa FPsc
Brara.E01162 10.0kb upstream 10.0kb upstream 10000 false A05: 6939129-6949128 Brassica rapa FPsc
Brara.E01162 10.0kb downstream 10.0kb downstream 11727 true A05: 6927402-6939128 Brassica rapa FPsc
Brara.E01162 10.0kb downstream 10.0kb downstream 10000 false A05: 6927402-6937401 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360172 5261 Brassicaceae View MSA
123829872 5264 Brassicales-Malvales View MSA
124339280 5266 SBM View MSA
124243356 5268 Malvidae View MSA
124062962 5270 Rosid View MSA
123740146 5271 Pentapetalae View MSA
122790968 5272 Eudicot View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier