Gene : Brara.E01176 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  1176
Name:  ? Brara.E01176 Secondary Identifier:  ? PAC:30627400
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6773 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E01176 0.5kb upstream 0.5kb upstream 11267 true A05: 7031609-7042875 Brassica rapa FPsc
Brara.E01176 0.5kb upstream 0.5kb upstream 500 false A05: 7042376-7042875 Brassica rapa FPsc
Brara.E01176 0.5kb downstream 0.5kb downstream 11267 true A05: 7031109-7042375 Brassica rapa FPsc
Brara.E01176 0.5kb downstream 0.5kb downstream 500 false A05: 7031109-7031608 Brassica rapa FPsc
Brara.E01176 1.0kb upstream 1.0kb upstream 11767 true A05: 7031609-7043375 Brassica rapa FPsc
Brara.E01176 1.0kb upstream 1.0kb upstream 1000 false A05: 7042376-7043375 Brassica rapa FPsc
Brara.E01176 1.0kb downstream 1.0kb downstream 11767 true A05: 7030609-7042375 Brassica rapa FPsc
Brara.E01176 1.0kb downstream 1.0kb downstream 1000 false A05: 7030609-7031608 Brassica rapa FPsc
Brara.E01176 2.0kb upstream 2.0kb upstream 12767 true A05: 7031609-7044375 Brassica rapa FPsc
Brara.E01176 2.0kb upstream 2.0kb upstream 2000 false A05: 7042376-7044375 Brassica rapa FPsc
Brara.E01176 2.0kb downstream 2.0kb downstream 12767 true A05: 7029609-7042375 Brassica rapa FPsc
Brara.E01176 2.0kb downstream 2.0kb downstream 2000 false A05: 7029609-7031608 Brassica rapa FPsc
Brara.E01176 5.0kb upstream 5.0kb upstream 15767 true A05: 7031609-7047375 Brassica rapa FPsc
Brara.E01176 5.0kb upstream 5.0kb upstream 5000 false A05: 7042376-7047375 Brassica rapa FPsc
Brara.E01176 5.0kb downstream 5.0kb downstream 15767 true A05: 7026609-7042375 Brassica rapa FPsc
Brara.E01176 5.0kb downstream 5.0kb downstream 5000 false A05: 7026609-7031608 Brassica rapa FPsc
Brara.E01176 10.0kb upstream 10.0kb upstream 20767 true A05: 7031609-7052375 Brassica rapa FPsc
Brara.E01176 10.0kb upstream 10.0kb upstream 10000 false A05: 7042376-7052375 Brassica rapa FPsc
Brara.E01176 10.0kb downstream 10.0kb downstream 20767 true A05: 7021609-7042375 Brassica rapa FPsc
Brara.E01176 10.0kb downstream 10.0kb downstream 10000 false A05: 7021609-7031608 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368152 5261 Brassicaceae View MSA
123839763 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier